Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6045 and Atu6046 are separated by 8 nucleotidesAtu6046 and Atu6047 are separated by 111 nucleotidesAtu6047 and Atu6048 are separated by 180 nucleotidesAtu6048 and Atu6049 are separated by 202 nucleotides Atu6045: Atu6045 - replication protein C, at 54,905 to 56,224 Atu6045 Atu6046: Atu6046 - DNA invertase, at 56,233 to 57,345 Atu6046 Atu6047: Atu6047 - conserved hypothetical protein, at 57,457 to 58,566 Atu6047 Atu6048: Atu6048 - conserved hypothetical protein, at 58,747 to 61,257 Atu6048 Atu6049: Atu6049 - hypothetical protein, at 61,460 to 62,647 Atu6049
Group Condition Atu6045 Atu6046 Atu6047 Atu6048 Atu6049
carbon source D-Saccharic potassium salt (C) -2.8 -0.5 -0.3 -0.1 +0.3
phage AgroPhage_E10 -3.0 +0.2 +0.2 -0.1 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.4 -0.7 -0.1 +0.0 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.0 -0.0 -0.3 -0.0 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 -0.3 -0.4 -0.1 +0.0
carbon source D-Saccharic potassium salt (C) -1.2 -0.3 -0.3 -0.1 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.4 -0.2 -0.1 +0.0 -0.0
carbon source Protocatechuic Acid (C) -1.3 -0.1 -0.2 -0.0 +0.1
carbon source D-Mannose (C) -0.7 -0.1 -0.3 +0.1 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.9 -0.2 -0.5 +0.2 -0.1
phage AgroPhage_B07 -1.0 -0.2 -0.2 +0.2 -0.1
nitrogen source L-Aspartic Acid (N) -1.3 +0.3 +0.2 +0.2 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.5 -0.6 +0.1 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +0.8 -0.6 -0.8 +0.0 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +0.9 -0.5 -0.7 +0.0 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +0.7 -0.3 -0.7 +0.0 -0.0
Atjh15 -1.0 +0.2 +0.4 +0.2 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +1.0 -0.3 -0.6 +0.0 -0.0
stress R2A with Cisplatin 0.0016 mM -0.8 +0.5 +0.5 -0.1 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.8 -0.2 -0.6 +0.1 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.2 -0.4 -0.1 +0.1 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +1.1 -0.2 -0.4 +0.0 -0.0
nitrogen source DL-2-Aminobutyric (N) -0.4 +0.2 +0.2 +0.1 +0.8
stress R2A with Bacitracin 0.6 mM -0.5 +0.7 +0.7 +0.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.2 -0.2 -0.0 -0.0 +0.3
stress R2A with Bacitracin 0.6 mM -0.2 +0.7 +0.7 -0.1 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.8 -0.4 -0.4 +0.2 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.9 -0.3 -0.3 +0.1 +0.1
nitrogen source 5-Aminolevulinic (N) +1.4 -0.0 -0.2 +0.0 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +2.4 -0.6 -0.0 +0.0 +0.3
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