Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6039 and Atu6040 overlap by 8 nucleotidesAtu6040 and Atu6041 overlap by 11 nucleotidesAtu6041 and Atu6042 overlap by 4 nucleotidesAtu6042 and Atu6043 are separated by 363 nucleotides Atu6039: Atu6039 - conjugal transfer protein, at 49,583 to 49,882 Atu6039 Atu6040: Atu6040 - conjugal transfer protein, at 49,875 to 50,276 Atu6040 Atu6041: Atu6041 - conjugal transfer protein, at 50,266 to 51,237 Atu6041 Atu6042: Atu6042 - autoinducer synthesis protein, at 51,234 to 51,869 Atu6042 Atu6043: Atu6043 - replication protein A, at 52,233 to 53,450 Atu6043
Group Condition Atu6039 Atu6040 Atu6041 Atu6042 Atu6043
phage AgroPhage_D10 -0.8 -0.3 -0.2 -0.1 N.D.
nitrogen source L-Methionine (N) -0.1 -0.6 -0.1 -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 -0.2 -0.1 -0.8 N.D.
nitrogen source L-Proline (N) -0.3 -0.9 -0.1 -0.1 N.D.
no phage P2L5 -0.2 -0.5 -0.3 -0.4 N.D.
phage phage 99.2 -0.6 -0.5 +0.1 -0.3 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 +0.1 -0.4 +0.2 N.D.
stress R2A with nitrite 9 mM -0.6 -0.5 +0.1 +0.1 N.D.
carbon source Dextrin from potato starch (C) +0.5 -1.3 -0.2 +0.1 N.D.
nitrogen source L-Valine (N) +0.4 -0.4 -0.4 -0.2 N.D.
phage phage 100.2 -0.1 +0.5 -0.3 -0.4 N.D.
carbon source D-Sorbitol (C) +0.6 -0.5 -0.1 -0.2 N.D.
carbon source D-Trehalose (C) +0.3 -0.7 -0.0 +0.3 N.D.
nitrogen source Betaine (N) -0.1 +0.7 -0.3 -0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.7 -0.3 -0.0 -0.4 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 +0.9 +0.2 -0.3 N.D.
nitrogen source L-Methionine (N) +0.1 +0.3 +0.3 -0.6 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.5 +0.1 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 -0.5 +0.1 -0.1 N.D.
carbon source D-Saccharic potassium salt (C) +0.6 -0.6 +0.2 -0.0 N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.7 -0.2 -0.3 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 +0.4 -0.3 -0.1 N.D.
phage phage 95.1 +0.4 +0.6 +0.0 -0.4 N.D.
nitrogen source Orotic (N) +1.1 +0.0 +0.1 -0.4 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.4 -0.2 -0.2 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.6 -0.2 +0.0 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.9 +0.1 +0.4 N.D.
nitrogen source 5-Aminolevulinic (N) +0.6 +0.4 +0.1 +0.3 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.5 -0.0 +0.4 N.D.
nitrogen source Putrescine (N) +1.0 +0.4 -0.0 +0.3 N.D.
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