Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6038 and Atu6039 are separated by 10 nucleotidesAtu6039 and Atu6040 overlap by 8 nucleotidesAtu6040 and Atu6041 overlap by 11 nucleotidesAtu6041 and Atu6042 overlap by 4 nucleotides Atu6038: Atu6038 - conjugal transfer protein, at 47,104 to 49,572 Atu6038 Atu6039: Atu6039 - conjugal transfer protein, at 49,583 to 49,882 Atu6039 Atu6040: Atu6040 - conjugal transfer protein, at 49,875 to 50,276 Atu6040 Atu6041: Atu6041 - conjugal transfer protein, at 50,266 to 51,237 Atu6041 Atu6042: Atu6042 - autoinducer synthesis protein, at 51,234 to 51,869 Atu6042
Group Condition Atu6038 Atu6039 Atu6040 Atu6041 Atu6042
phage AgroPhage_D10 +0.0 -0.8 -0.3 -0.2 -0.1
carbon source D-Sorbitol (C) -0.3 -0.3 -0.1 -0.2 -0.5
nitrogen source L-Methionine (N) -0.0 -0.1 -0.6 -0.1 -0.6
nitrogen source L-Proline (N) +0.0 -0.3 -0.9 -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 -0.3 -0.2 -0.1 -0.8
phage phage 99.2 -0.0 -0.6 -0.5 +0.1 -0.3
no phage P2L5 +0.1 -0.2 -0.5 -0.3 -0.4
carbon source Dextrin from potato starch (C) -0.0 +0.5 -1.3 -0.2 +0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.8 +0.1 -0.4 +0.2
nitrogen source L-Valine (N) -0.1 +0.4 -0.4 -0.4 -0.2
nitrogen source DL-2-Aminobutyric (N) +0.1 -0.6 -0.1 +0.4 -0.2
carbon source D-Sorbitol (C) -0.2 +0.6 -0.5 -0.1 -0.2
carbon source D-Trehalose (C) -0.1 +0.3 -0.7 -0.0 +0.3
nitrogen source Betaine (N) -0.0 -0.1 +0.7 -0.3 -0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.1 +0.7 -0.3 -0.0 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.7 -0.5 +0.1 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.8 +0.9 +0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 +0.6 -0.5 +0.1 -0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.7 -0.2 -0.3 -0.0
carbon source D-Saccharic potassium salt (C) +0.1 +0.6 -0.6 +0.2 -0.0
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.1 +0.7 -0.2 -0.3
phage phage 95.1 -0.0 +0.4 +0.6 +0.0 -0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.7 +0.4 -0.3 -0.1
nitrogen source Orotic (N) +0.0 +1.1 +0.0 +0.1 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.6 +0.4 -0.2 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.4 +0.9 +0.1 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.6 +0.6 -0.2 +0.0
nitrogen source 5-Aminolevulinic (N) +0.3 +0.6 +0.4 +0.1 +0.3
nitrogen source Putrescine (N) +0.1 +1.0 +0.4 -0.0 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.7 +0.5 -0.0 +0.4
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