Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6036 and Atu6037 overlap by 4 nucleotidesAtu6037 and Atu6038 overlap by 29 nucleotidesAtu6038 and Atu6039 are separated by 10 nucleotidesAtu6039 and Atu6040 overlap by 8 nucleotides Atu6036: Atu6036 - entry-exclusion protein, at 46,114 to 46,332 Atu6036 Atu6037: Atu6037 - conjugal transfer protein, at 46,329 to 47,132 Atu6037 Atu6038: Atu6038 - conjugal transfer protein, at 47,104 to 49,572 Atu6038 Atu6039: Atu6039 - conjugal transfer protein, at 49,583 to 49,882 Atu6039 Atu6040: Atu6040 - conjugal transfer protein, at 49,875 to 50,276 Atu6040
Group Condition Atu6036 Atu6037 Atu6038 Atu6039 Atu6040
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -3.0 -0.0 +0.0 +0.1 -0.0
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.1 -0.1 -0.0 +0.0 -0.5
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -2.3 +0.0 -0.1 +0.2 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -2.1 -0.1 -0.0 +0.2 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.8 +0.1 +0.2 -0.2 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.9 -0.0 +0.1 -0.8 +0.9
stress R2A with Chlorite 0.2 mM -2.0 -0.1 +0.0 +0.1 +0.3
stress R2A with Strontium chloride 750 mM -1.9 +0.0 +0.1 +0.5 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.8 +0.5 -0.1 +0.7 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.6 -0.0 +0.1 -0.4 +0.9
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.2 -0.4 +0.1 +0.7 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.5 +0.1 -0.0 -0.1 +0.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -2.4 +0.1 +0.3 +0.7 +0.5
carbon source Sucrose (C) +1.6 -0.0 -0.0 -0.9 +0.1
phage AgroPhage_E10 +1.8 -0.4 -0.1 +0.3 -0.6
carbon source Rhamnogalacturonan - from potato (C) +1.5 -0.1 -0.0 +0.3 -0.6
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.5 +0.1 +0.2 -0.8 +0.1
carbon source Dextrin from potato starch (C) +1.7 +0.2 -0.0 +0.5 -1.3
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +2.0 -0.2 -0.1 +0.1 -0.4
carbon source gluconate (C) +1.6 -0.3 +0.1 +0.4 -0.2
carbon source Dextrin from potato starch (C) +1.9 -0.1 +0.1 +0.3 -0.4
carbon source L-Arabinose (C) +1.4 +0.2 -0.1 +0.7 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +2.4 -0.1 +0.1 -0.3 -0.1
carbon source D-Saccharic potassium salt (C) +2.9 -0.3 -0.1 -0.6 +0.1
carbon source D-Saccharic potassium salt (C) +2.2 -0.1 +0.1 +0.6 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.6 -0.1 -0.0 +0.7 +0.2
nitrogen source Putrescine (N) +1.6 -0.2 +0.0 +0.4 +0.6
carbon source acetate (C) +1.9 -0.1 -0.1 +0.6 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +2.1 +0.0 -0.1 +0.5 -0.0
nitrogen source Putrescine (N) +2.2 +0.1 +0.1 +1.0 +0.4
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