Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6033 and Atu6034 are separated by 17 nucleotidesAtu6034 and Atu6035 are separated by 14 nucleotidesAtu6035 and Atu6036 overlap by 7 nucleotidesAtu6036 and Atu6037 overlap by 4 nucleotides Atu6033: Atu6033 - conjugal transfer protein, at 43,375 to 44,229 Atu6033 Atu6034: Atu6034 - conjugal transfer protein, at 44,247 to 44,909 Atu6034 Atu6035: Atu6035 - conjugal transfer protein, at 44,924 to 46,120 Atu6035 Atu6036: Atu6036 - entry-exclusion protein, at 46,114 to 46,332 Atu6036 Atu6037: Atu6037 - conjugal transfer protein, at 46,329 to 47,132 Atu6037
Group Condition Atu6033 Atu6034 Atu6035 Atu6036 Atu6037
stress Chloramphenicol 12.5 ug/mL -0.2 -0.3 +0.0 -3.1 -0.3
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.3 -0.0 +0.1 -3.0 -0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.5 -0.1 -1.2 -0.4
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 -0.1 -0.1 -2.3 +0.0
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.0 -0.2 -2.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 +0.2 -0.1 -2.6 +0.2
Atjh2 -0.0 -0.1 +0.3 -2.2 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.2 -0.2 -1.9 -0.0
stress R2A with Strontium chloride 750 mM -0.3 +0.2 -0.1 -1.9 +0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 -0.2 -0.1 -2.4 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.2 +0.1 -2.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.0 -0.0 -1.8 +0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.3 -0.3 +0.3 -1.2 -0.3
carbon source Methyl alpha-D-glucopyranoside (C) +0.6 +0.0 +0.1 -2.0 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.1 -0.0 -1.6 -0.0
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.0 -0.1 -0.3 +1.5 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.1 -0.2 +1.4 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.2 +0.5 +1.3 +0.3
carbon source Fumarate (C) +0.2 -0.3 -0.2 +1.8 -0.0
phage AgroPhage_E10 +0.3 +0.1 -0.1 +1.8 -0.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.1 -0.1 +2.0 -0.2
nitrogen source Putrescine (N) -0.4 +0.3 +0.3 +1.6 -0.2
carbon source D-Saccharic potassium salt (C) -0.1 -0.1 -0.1 +2.2 -0.1
nitrogen source Putrescine (N) -0.3 -0.2 +0.1 +2.3 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.1 -0.1 +2.1 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.5 -0.2 +1.6 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.1 -0.1 +2.4 -0.1
carbon source Dextrin from potato starch (C) +0.3 +0.1 +0.2 +1.7 +0.2
carbon source Dextrin from potato starch (C) +0.7 +0.0 +0.1 +1.9 -0.1
carbon source D-Saccharic potassium salt (C) +0.1 +0.1 -0.0 +2.9 -0.3
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