Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6030 and Atu6031 overlap by 4 nucleotidesAtu6031 and Atu6032 are separated by 12 nucleotidesAtu6032 and Atu6033 overlap by 1 nucleotidesAtu6033 and Atu6034 are separated by 17 nucleotides Atu6030: Atu6030 - ORF13 hypothetical protein, at 41,214 to 41,573 Atu6030 Atu6031: Atu6031 - conjugal transfer protein, at 41,570 to 42,886 Atu6031 Atu6032: Atu6032 - conjugal transfer protein, at 42,899 to 43,375 Atu6032 Atu6033: Atu6033 - conjugal transfer protein, at 43,375 to 44,229 Atu6033 Atu6034: Atu6034 - conjugal transfer protein, at 44,247 to 44,909 Atu6034
Group Condition Atu6030 Atu6031 Atu6032 Atu6033 Atu6034
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 -0.8 -0.2 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 -0.4 -0.4 -0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.3 +0.1 -1.0 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 -0.3 -0.3 +0.1 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 -0.8 -0.4 -0.0
carbon source Dextrin from potato starch (C) -0.6 +0.1 -0.8 +0.3 +0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.2 +0.1 -0.1 -0.8 +0.2
stress R2A with Tetracycline 0.002 mM -1.0 +0.2 -0.1 +0.3 -0.0
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.2 -0.3 +0.4 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 -0.1 +0.0 -0.6 +0.4
nitrogen source L-Methionine (N) +0.4 -0.3 +0.2 -0.4 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.1 -0.3 -0.2 +0.4
carbon source Rhamnogalacturonan - from potato (C) -1.1 +0.2 -0.2 +0.3 +0.4
nitrogen source Putrescine (N) -0.4 -0.2 +0.4 -0.4 +0.3
stress R2A with Vancomycin 0.009 mM -0.2 -0.0 +0.1 -0.5 +0.5
nitrogen source Urea (N) -0.7 -0.1 +0.4 +0.6 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.1 -0.2 +0.8 -0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.3 -0.1 +0.5 -0.3
nitrogen source Orotic (N) +0.2 -0.1 +0.3 -0.7 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 +0.0 -0.2 +0.8 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 -0.4 +0.7 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.0 -0.6 +0.3 +0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.2 +0.4 +0.4 -0.2
nitrogen source L-Aspartic Acid (N) +0.2 -0.1 +0.6 +0.4 -0.4
carbon source Dextrin from potato starch (C) +0.4 -0.0 -0.3 +0.8 +0.0
nitrogen source 6-aminocaproic (N) +0.4 -0.0 +0.5 +0.6 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.1 -0.1 +0.1 +0.4
nitrogen source 4-Aminobutyric (N) +0.5 +0.1 +0.6 +0.3 +0.1
nitrogen source L-Phenylalanine (N) +0.7 +0.3 +0.3 +0.6 +0.1
nitrogen source DL-2-Aminobutyric (N) +1.3 -0.1 +0.5 +0.6 +0.5
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