Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6016 and Atu6017 overlap by 4 nucleotidesAtu6017 and Atu6018 are separated by 76 nucleotidesAtu6018 and Atu6019 are separated by 47 nucleotidesAtu6019 and Atu6020 overlap by 4 nucleotides Atu6016: Atu6016 - ornithine cyclodeaminase, at 24,980 to 26,095 Atu6016 Atu6017: Atu6017 - NAD/NADP octopine/nopaline dehydrogenase, at 26,092 to 27,174 Atu6017 Atu6018: Atu6018 - arginase, at 27,251 to 28,225 Atu6018 Atu6019: Atu6019 - D-nopaline dehydrogenase, at 28,273 to 29,691 Atu6019 Atu6020: Atu6020 - conserved hypothetical protein, at 29,688 to 29,981 Atu6020
Group Condition Atu6016 Atu6017 Atu6018 Atu6019 Atu6020
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -1.8 -1.5 -1.4 -3.5 -3.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 -1.8 -1.3 -1.4 -3.5 -3.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -1.5 -1.4 -1.5 -3.1 -3.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -1.7 -1.5 -1.6 -3.1 -3.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -1.6 -1.5 -1.4 -2.9 -3.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.2 -0.8 -0.8 -3.6 -3.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 -0.9 -0.6 -3.6 -3.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 -0.7 -0.6 -3.2 -3.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -1.4 -0.9 -1.1 -2.6 -3.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 -0.8 -0.8 -0.6 -3.5 -3.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 -0.7 -0.6 -0.6 -3.2 -2.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.2 -1.1 -1.2 -2.0 -1.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.5 -0.6 -3.0 -2.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.4 -0.4 -2.7 -2.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 -0.7 -0.5 -0.5 -2.8 -2.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 -0.5 -0.4 -0.5 -2.6 -2.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 -0.6 -0.5 -2.6 -2.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.9 -0.9 -1.1 -1.6 -1.6
no phage P4L4 -1.1 -0.8 -0.7 -1.7 -1.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.7 -0.6 -0.4 -2.4 -1.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.0 -1.0 -0.7 -1.7 -1.4
no phage P2L4 -1.1 -1.1 -0.9 -1.4 -1.3
no phage P2L5 -0.9 -0.9 -0.7 -1.4 -1.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.3 -0.3 -2.5 -1.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.5 -0.5 -2.4 -1.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.9 -0.9 -0.9 -1.4 -1.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.4 -0.2 -2.1 -2.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.0 -1.1 -0.9 -1.3 -0.9
no phage P1L4 -0.8 -0.9 -0.8 -1.3 -1.2
no phage P3L4 -0.7 -0.8 -0.8 -1.5 -1.3
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