Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu8061 and Atu6004 are separated by 178 nucleotidesAtu6004 and Atu6005 are separated by 478 nucleotidesAtu6005 and Atu6007 are separated by 652 nucleotidesAtu6007 and Atu6008 are separated by 207 nucleotides Atu8061: Atu8061 - hypothetical protein, at 7,133 to 7,399 Atu8061 Atu6004: Atu6004 - D protein, at 7,578 to 8,273 Atu6004 Atu6005: Atu6005 - E protein, at 8,752 to 9,696 Atu6005 Atu6007: Atu6007 - Mannopine synthase, at 10,349 to 11,383 Atu6007 Atu6008: Atu6008 - agrocinopine synthase, at 11,591 to 12,847 Atu6008
Group Condition Atu8061 Atu6004 Atu6005 Atu6007 Atu6008
pH R2A pH 5.5 -0.2 -0.5 -0.4 -0.2 -0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 -0.0 -0.1 -0.2 -0.3
stress R2A with G418 disolution 0.02 mM -0.1 -0.2 -0.5 -0.2 -0.5
pH R2A pH 5.5 -0.3 -0.3 -0.3 -0.2 -0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.5 +0.1 -0.0 -0.3
carbon source Melibiose (C) -0.3 -0.3 -0.3 -0.2 -0.2
carbon source Melibiose (C) -0.2 -0.3 -0.3 -0.2 -0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.1 -0.1 -0.2 -0.3
stress R2A with Kanamycin sulfate 0.02 mM -0.2 -0.1 -0.3 -0.3 -0.2
carbon source 2-6-dihydroxybenzoic (C) -0.3 -0.3 -0.2 -0.2 -0.1
stress R2A with Kanamycin sulfate 0.02 mM -0.5 -0.0 -0.3 -0.1 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.1 -0.2 +0.2 -0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.1 +0.2 +0.0 -0.5
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.0 +0.2 -0.1 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.0 -0.0 -0.3 +0.2
nitrogen source 6-aminocaproic (N) -0.6 -0.3 +0.4 +0.3 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 +0.1 +0.1 -0.0 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.5 +0.1 +0.1 -0.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 +0.1 +0.2 -0.1 +0.2
nitrogen source spermidine (N) -0.7 +0.4 -0.0 +0.2 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.1 -0.1 -0.2 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.4 -0.1 +0.2 -0.2 -0.1
nitrogen source Ethanolamine (N) +0.4 +0.0 +0.1 +0.2 -0.4
carbon source Dextrin from potato starch (C) +0.3 +0.2 +0.4 +0.2 -0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 +0.6 -0.1 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 -0.1 -0.0 +0.1 +0.2
carbon source Dextrin from potato starch (C) +0.2 +0.4 +0.3 +0.2 +0.2
carbon source D-Galactose (C) +0.4 +0.3 +0.2 +0.2 +0.2
nitrogen source L-Leucine (N) +0.6 +0.2 +0.2 +0.2 +0.2
carbon source Ribitol (C) +0.4 +0.3 +0.4 +0.4 +0.3
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