Fitness for 5 genes in Agrobacterium fabrum C58

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Atu6001	Atu6002	Atu6003	Atu8061	Atu6004
in planta	Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.3	+0.0	-0.4	-0.5	-0.5
in planta	Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.2	-0.1	-0.2	-1.1	-0.0
carbon source	Melibiose (C)	-0.1	-0.3	-0.5	-0.3	-0.3
carbon source	Melibiose (C)	-0.3	-0.3	-0.2	-0.2	-0.3
pH	R2A pH 5.5	-0.1	-0.2	-0.3	-0.2	-0.5
carbon source	2-6-dihydroxybenzoic (C)	-0.3	-0.3	-0.1	-0.3	-0.3
in planta	Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.1	-0.1	-0.3	-0.3	-0.3
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.1	-0.1	-0.3	-0.6	+0.1
in planta	Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.1	-0.1	-0.3	-0.7	+0.1
in planta	Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.0	-0.3	-0.3	-0.4	+0.1
phage	AgroPhage_E10	+0.2	+0.2	-0.4	-0.2	-0.3
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	-0.1	-0.1	-0.3	+0.3	-0.3
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.4	-0.1	-0.1	-0.6	-0.0
lb	LB	+0.1	-0.1	-0.4	-0.3	+0.2
in planta	Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	+0.1	-0.2	+0.4	-0.4	-0.1
nitrogen source	spermidine (N)	+0.2	+0.1	+0.0	-0.7	+0.4
nitrogen source	spermidine (N)	-0.3	+0.1	+0.3	-0.2	+0.3
nitrogen source	L-Phenylalanine (N)	+0.4	-0.1	+0.3	-0.2	-0.2
nitrogen source	6-aminocaproic (N)	+0.1	-0.0	+0.6	-0.3	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.1	-0.2	+0.6	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.5	-0.1	+0.0	+0.4	-0.1
nitrogen source	L-Leucine (N)	+0.3	+0.1	-0.2	+0.6	+0.2
nitrogen source	DL-2-Aminobutyric (N)	-0.3	+0.4	+0.5	+0.2	+0.1
nitrogen source	L-Leucine (N)	+0.2	+0.1	+0.3	+0.2	+0.3
carbon source	Dextrin from potato starch (C)	+0.3	+0.1	+0.3	+0.3	+0.2
nitrogen source	L-Phenylalanine (N)	+0.4	+0.0	+0.2	+0.4	+0.2
carbon source	D-Galactose (C)	+0.3	+0.2	+0.2	+0.4	+0.3
no phage	P2L4	+0.3	+0.2	+0.4	+0.6	+0.1
carbon source	Dextrin from potato starch (C)	+0.4	+0.1	+0.4	+0.2	+0.4
carbon source	Ribitol (C)	+0.4	+0.3	+0.3	+0.4	+0.3