Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6000 and Atu6001 are separated by 886 nucleotidesAtu6001 and Atu6002 are separated by 455 nucleotidesAtu6002 and Atu6003 are separated by 1039 nucleotidesAtu6003 and Atu8061 are separated by 262 nucleotides Atu6000: Atu6000 - agrocinopine synthase, at 387 to 1,502 Atu6000 Atu6001: Atu6001 - 5 protein, at 2,389 to 3,072 Atu6001 Atu6002: Atu6002 - C protein, at 3,528 to 5,099 Atu6002 Atu6003: Atu6003 - C, at 6,139 to 6,870 Atu6003 Atu8061: Atu8061 - hypothetical protein, at 7,133 to 7,399 Atu8061
Group Condition Atu6000 Atu6001 Atu6002 Atu6003 Atu8061
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.2 -0.1 -0.2 -1.1
carbon source Melibiose (C) -0.2 -0.1 -0.3 -0.5 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 -0.1 -0.3 -0.6
carbon source Melibiose (C) -0.2 -0.3 -0.3 -0.2 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.5 -0.1 +0.1 -0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.3 +0.0 -0.4 -0.5
stress R2A with cyanide 2.5 mM -0.2 +0.0 -0.2 -0.5 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 -0.1 -0.3 -0.7
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 +0.1 -0.1 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.1 -0.1 -0.3 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.4 -0.1 -0.1 -0.6
phage AgroPhage_E10 -0.2 +0.2 +0.2 -0.4 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.1 -0.2 +0.4 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.3 +0.0 -0.4 +0.2
nitrogen source spermidine (N) +0.3 +0.2 +0.1 +0.0 -0.7
nitrogen source Hydantoin (N) +0.2 -0.1 +0.0 -0.3 +0.4
nitrogen source Betaine (N) +0.3 +0.3 +0.1 -0.4 +0.2
nitrogen source 6-aminocaproic (N) +0.2 +0.1 -0.0 +0.6 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.2 +0.1 -0.2 +0.6
nitrogen source L-Phenylalanine (N) +0.2 +0.4 -0.1 +0.3 -0.2
nitrogen source L-Leucine (N) +0.1 +0.3 +0.1 -0.2 +0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 -0.1 +0.1 +0.7
nitrogen source DL-2-Aminobutyric (N) +0.3 -0.3 +0.4 +0.5 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.1 +0.1 -0.0 +0.7
carbon source Dextrin from potato starch (C) +0.1 +0.4 +0.1 +0.4 +0.2
nitrogen source L-Phenylalanine (N) +0.2 +0.4 +0.0 +0.2 +0.4
carbon source D-Galactose (C) +0.2 +0.3 +0.2 +0.2 +0.4
carbon source Dextrin from potato starch (C) +0.5 +0.3 +0.1 +0.3 +0.3
no phage P2L4 +0.2 +0.3 +0.2 +0.4 +0.6
carbon source Ribitol (C) +0.4 +0.4 +0.3 +0.3 +0.4
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