Fitness for 3 genes in Agrobacterium fabrum C58

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500 ntAtu6000 and Atu6001 are separated by 886 nucleotidesAtu6001 and Atu6002 are separated by 455 nucleotides Atu6000: Atu6000 - agrocinopine synthase, at 387 to 1,502 Atu6000 Atu6001: Atu6001 - 5 protein, at 2,389 to 3,072 Atu6001 Atu6002: Atu6002 - C protein, at 3,528 to 5,099 Atu6002
Group Condition Atu6000 Atu6001 Atu6002
Atjh15 -0.4 -0.4 -0.4
Atjh2 -0.3 -0.6 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.5 -0.1
carbon source Melibiose (C) -0.2 -0.3 -0.3
Atjh2 -0.2 -0.2 -0.4
carbon source 2-6-dihydroxybenzoic (C) -0.1 -0.3 -0.3
stress Chloramphenicol 12.5 ug/mL -0.2 -0.4 -0.1
phage phage 100.3 -0.4 -0.1 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 -0.1
Atjh2 -0.2 -0.3 -0.1
carbon source Melibiose (C) -0.2 -0.1 -0.3
carbon source Stachyose (C) -0.2 -0.2 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.2 -0.2
nitrogen source Nicotinamide (N) +0.2 +0.3 -0.1
nitrogen source DL-2-Aminobutyric (N) +0.3 -0.3 +0.4
nitrogen source L-Methionine (N) -0.2 +0.4 +0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.0 +0.5 -0.1
carbon source gluconate (C) +0.3 +0.2 -0.1
carbon source L-Galactose (C) +0.3 +0.3 -0.1
nitrogen source L-Phenylalanine (N) +0.2 +0.4 -0.1
carbon source D-Maltose (C) +0.4 +0.2 +0.0
nitrogen source spermidine (N) +0.3 +0.2 +0.1
nitrogen source Betaine (N) +0.3 +0.3 +0.1
no phage P2L4 +0.2 +0.3 +0.2
nitrogen source L-Phenylalanine (N) +0.2 +0.4 +0.0
carbon source Cellohexaose (C) +0.2 +0.4 +0.1
carbon source D-Galactose (C) +0.2 +0.3 +0.2
carbon source Dextrin from potato starch (C) +0.5 +0.3 +0.1
carbon source Ribitol (C) +0.4 +0.4 +0.3
Atjh14 +0.3 +0.5 +0.3
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