Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5525 and Atu5526 are separated by 108 nucleotidesAtu5526 and Atu5527 are separated by 22 nucleotidesAtu5527 and Atu5528 are separated by 739 nucleotidesAtu5528 and Atu5529 are separated by 431 nucleotides Atu5525: Atu5525 - ABC transporter nucleotide binding/ATPase (branched chain amino acid), at 517,109 to 518,026 Atu5525 Atu5526: Atu5526 - monooxygenase, at 518,135 to 519,238 Atu5526 Atu5527: Atu5527 - NADH-dependent FMN reductase, at 519,261 to 519,863 Atu5527 Atu5528: Atu5528 - two component sensor kinase, at 520,603 to 522,531 Atu5528 Atu5529: Atu5529 - two component sensor kinase, at 522,963 to 524,114 Atu5529
Group Condition Atu5525 Atu5526 Atu5527 Atu5528 Atu5529
phage phage 100.2 +0.0 -0.3 -0.5 -0.1 -0.4
nitrogen source L-Ornithine (N) -0.0 +0.1 -0.8 -0.2 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.4 -0.6 -0.1 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.0 -0.3 +0.1 -0.6
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.1 -0.4 -0.5 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.1 -0.6 +0.1 -0.2
phage AgroPhage_F03 -0.2 +0.2 -0.2 +0.1 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.0 -0.4 +0.2 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 +0.4 -0.2 -0.4
carbon source D-Saccharic potassium salt (C) +0.1 +0.4 -0.5 -0.0 -0.2
phage phage 99.2 +0.0 -0.3 +0.3 +0.2 -0.3
carbon source D-Sorbitol (C) -0.2 -0.1 +0.6 -0.0 -0.2
nitrogen source Betaine (N) -0.1 -0.2 +0.6 +0.1 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 +0.3 +0.0 +0.4
nitrogen source L-Methionine (N) +0.4 -0.2 +0.2 +0.1 -0.1
nitrogen source L-Valine (N) +0.3 +0.0 +0.5 -0.2 -0.2
nitrogen source L-Aspartic Acid (N) +0.2 -0.3 +0.5 +0.2 -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 +0.6 +0.1 +0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 +0.3 +0.1 -0.2
nitrogen source Putrescine (N) +0.2 -0.3 +0.4 +0.2 +0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.0 -0.1 +0.2 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 +0.4 -0.1 +0.1 +0.4
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 -0.2 +0.6 -0.0 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.3 +0.4 +0.3 +0.1
carbon source D-Saccharic potassium salt (C) +0.2 +0.3 +0.2 +0.4 -0.0
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 +0.2 +0.6 +0.1 -0.0
carbon source m-Inositol (C) +0.0 +0.3 +0.3 +0.1 +0.3
stress R2A with Tetracycline 0.002 mM +0.2 +0.3 +0.2 +0.2 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 +0.2 +0.6 -0.1 +0.4
nitrogen source DL-2-Aminobutyric (N) +0.3 +0.5 +0.4 +0.3 +0.4
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