Fitness for 5 genes in Agrobacterium fabrum C58

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Atu5500	Atu5501	Atu5502	Atu5503	Atu5504
nitrogen source	L-Valine (N)	+0.0	-2.4	-0.2	-0.2	-0.1
nitrogen source	5-Aminolevulinic (N)	+0.0	-1.8	-1.0	-0.1	+0.2
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.2	-0.2	-0.7	-0.3	-1.3
nitrogen source	spermidine (N)	+0.0	-1.4	-0.1	+0.2	-0.5
in planta	Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.1	-1.4	-0.2	+0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-1.7	+0.1	+0.1	+0.1
r2a control	R2A control	-0.0	-1.3	+0.6	-0.3	-0.2
carbon source	D-Mannose (C)	+0.1	-1.2	+0.2	-0.1	-0.3
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.1	-1.3	-0.3	+0.1	+0.3
	Atjh14	-0.3	-1.4	+0.1	+0.5	-0.0
nitrogen source	L-Methionine (N)	-0.1	-1.6	+0.2	-0.0	+0.6
nitrogen source	L-Valine (N)	-0.0	-1.4	+0.0	+0.3	+0.3
nitrogen source	Nicotinamide (N)	+0.1	+0.4	-1.1	+0.0	-0.2
in planta	Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.1	-0.7	-0.5	+0.1	+0.5
nitrogen source	DL-2-Aminobutyric (N)	+0.2	-0.9	-0.3	+0.9	-0.3
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.1	+0.1	-1.2	+0.3	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.8	+0.6	-0.2	-0.2
in planta	Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.0	+0.6	-1.0	+0.2	+0.2
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.3	-0.3	+0.6	-0.0	-0.7
in planta	Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days	+0.0	+0.8	-0.3	+0.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.2	-0.6	+0.2	+1.0
nitrogen source	5-Aminolevulinic (N)	-0.2	+1.5	-0.5	-0.0	-0.1
in planta	Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.0	+1.2	-0.2	-0.0	-0.4
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.1	+0.6	-0.9	+0.3	+0.8
stress	R2A with Tetracycline 0.002 mM	-0.0	+1.2	+0.3	-0.3	-0.2
r2a_control	R2A control	+0.1	+0.8	+0.5	-0.1	-0.4
stress	R2A with tungstate 375 mM	-0.0	+0.9	+0.5	+0.2	-0.3
in planta	Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.0	+1.1	+0.5	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+2.2	-0.2	-0.2	+0.2
no phage	P2L5	+0.0	+0.8	+1.0	+0.0	+0.4