Fitness for 5 genes in Agrobacterium fabrum C58

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 953 experiments or choose conditions or try the comparative fitness browser

500 ntAtu5490 and Atu8052 are separated by 191 nucleotidesAtu8052 and Atu5491 are separated by 40 nucleotidesAtu5491 and Atu5492 are separated by 76 nucleotidesAtu5492 and Atu5493 are separated by 24 nucleotides Atu5490: Atu5490 - ECF family RNA polymerase sigma factor, at 479,424 to 479,966 Atu5490 Atu8052: Atu8052 - hypothetical protein, at 480,158 to 480,295 Atu8052 Atu5491: Atu5491 - catalase C, at 480,336 to 482,477 Atu5491 Atu5492: Atu5492 - hypothetical protein, at 482,554 to 483,156 Atu5492 Atu5493: Atu5493 - hypothetical protein, at 483,181 to 483,498 Atu5493
Group Condition Atu5490 Atu8052 Atu5491 Atu5492 Atu5493
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -2.7 -0.3 +0.2 -0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.0 -2.6 +0.1 +0.4 -0.9
phage AgroPhage_B07 -0.0 -2.5 -0.3 +0.3 -0.5
nitrogen source L-Glutamic (N) -0.4 -1.4 +0.0 +0.2 -1.0
nitrogen source L-Asparagine (N) -0.2 -2.0 +0.1 -0.4 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -2.0 +0.1 -0.4 -0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -2.0 -0.0 +0.2 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -1.7 -0.0 +0.3 -0.5
nitrogen source DL-2-Aminobutyric (N) -0.5 -1.4 -0.1 +0.5 -0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.0 -1.5 +0.0 +0.2 -0.7
phage AgroPhage_D04 +0.0 -2.0 +0.2 -0.0 -0.1
phage AgroPhage_H03 +0.1 -2.0 +0.1 +0.2 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.0 -1.6 -0.0 +0.5 -0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.1 -1.1 -0.1 +0.2 -0.8
carbon source D-Leucrose (C) +0.0 -1.9 -0.0 +0.3 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -1.7 +0.1 -0.1 +0.3
stress R2A with Kanamycin sulfate 0.02 mM -0.2 -1.2 -0.0 -0.4 +0.3
nitrogen source Putrescine (N) +0.3 -0.3 +0.2 -0.6 -1.0
carbon source Xylitol (C) +0.1 -1.7 +0.0 +0.2 +0.1
nophagecontrol No phage control -0.2 -1.5 +0.1 +0.3 +0.3
carbon source L-Galactose (C) +0.3 -1.1 +0.1 +0.3 -0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -1.5 +0.1 +0.5 -0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -1.6 +0.2 +0.1 +0.2
carbon source Rhamnogalacturonan - from potato (C) +0.3 -1.1 +0.1 -0.6 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 -1.1 +0.2 +0.0 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -0.9 -0.1 -0.2 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 -0.5 -0.0 -0.5 +0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.2 +0.3 +0.8 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +1.3 -0.3 +0.4 -0.2
carbon source D-Saccharic potassium salt (C) -0.0 +1.5 -0.1 -0.2 +0.4
remove
Atu5490
plot		 remove
Atu8052
plot		 remove
Atu5491		 remove
Atu5492
plot		 remove
Atu5493
plot