Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5488 and Atu5489 are separated by 141 nucleotidesAtu5489 and Atu5490 are separated by 124 nucleotidesAtu5490 and Atu8052 are separated by 191 nucleotidesAtu8052 and Atu5491 are separated by 40 nucleotides Atu5488: Atu5488 - hypothetical protein, at 478,166 to 478,930 Atu5488 Atu5489: Atu5489 - hypothetical protein, at 479,072 to 479,299 Atu5489 Atu5490: Atu5490 - ECF family RNA polymerase sigma factor, at 479,424 to 479,966 Atu5490 Atu8052: Atu8052 - hypothetical protein, at 480,158 to 480,295 Atu8052 Atu5491: Atu5491 - catalase C, at 480,336 to 482,477 Atu5491
Group Condition Atu5488 Atu5489 Atu5490 Atu8052 Atu5491
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 -0.1 -2.7 -0.3
phage AgroPhage_B07 +0.1 +0.1 -0.0 -2.5 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.1 -0.1 -0.0 -2.6 +0.1
phage AgroPhage_D04 -0.0 -0.6 +0.0 -2.0 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.6 +0.1 -2.0 +0.1
carbon source methyl-beta-D-xylopyranoside (C) -0.2 -0.0 -0.0 -2.0 -0.0
nophagecontrol No phage control -0.1 -0.4 -0.2 -1.5 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.3 +0.2 -2.0 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.7 +0.4 -1.5 +0.1
phage AgroPhage_H03 -0.0 +0.1 +0.1 -2.0 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -1.5 -0.0 -0.2 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.4 -0.1 -1.7 -0.0
nitrogen source L-Glutamic (N) +0.1 +0.3 -0.4 -1.4 +0.0
nitrogen source L-Asparagine (N) -0.1 +0.7 -0.2 -2.0 +0.1
carbon source D-Leucrose (C) -0.0 +0.5 +0.0 -1.9 -0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.1 +0.2 -1.6 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +0.4 -0.1 -1.7 +0.1
nitrogen source Orotic (N) -0.1 +0.7 +0.0 -1.0 -0.4
nitrogen source DL-2-Aminobutyric (N) +0.1 +1.2 -0.5 -1.4 -0.1
phage AgroPhage_E04 +0.4 +0.4 -0.5 -1.0 +0.1
carbon source Rhamnogalacturonan - from potato (C) +0.0 +0.5 +0.2 -1.3 -0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.3 -1.3 +0.3 +0.3 -0.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.6 -0.2 -1.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +0.2 +0.6 -1.1 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.6 -0.1 +1.0 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.3 -0.4 +1.3 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +1.7 -0.1 -0.1 +0.1
phage phage 95.1 -0.1 +0.8 +0.1 +1.1 -0.3
phage phage 100.2 +0.1 +0.5 +0.2 +1.3 -0.1
carbon source D-Saccharic potassium salt (C) +0.1 +0.6 -0.0 +1.5 -0.1
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