Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5476 and Atu5477 are separated by 26 nucleotidesAtu5477 and Atu5478 overlap by 4 nucleotidesAtu5478 and Atu5479 overlap by 4 nucleotidesAtu5479 and Atu5480 are separated by 13 nucleotides Atu5476: Atu5476 - CTP synthase, at 467,628 to 468,851 Atu5476 Atu5477: Atu5477 - peptidase, at 468,878 to 470,047 Atu5477 Atu5478: Atu5478 - chloromuconate cycloisomerase, at 470,044 to 471,141 Atu5478 Atu5479: Atu5479 - acetylornithine deacetylase, at 471,138 to 472,301 Atu5479 Atu5480: Atu5480 - ABC transporter nucleotide binding/ATPase, at 472,315 to 473,079 Atu5480
Group Condition Atu5476 Atu5477 Atu5478 Atu5479 Atu5480
Atjh2 -0.3 -0.3 -0.3 -0.3 -0.2
Atjh2 -0.2 -0.3 -0.2 -0.3 -0.1
phage AgroPhage_D10 -0.1 -0.1 -0.2 -0.3 -0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.0 -0.1 -0.3 -0.4
No phage control -0.3 -0.1 +0.1 -0.2 -0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 -0.2 -0.2 -0.4
nitrogen source D-Lysine (N) +0.2 -0.2 -0.3 -0.3 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.1 -0.2 -0.2 +0.3
lb LB -0.3 +0.2 +0.1 -0.1 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.1 +0.1 -0.4 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.3 +0.0 -0.2 -0.3
Atjh14 -0.3 +0.3 -0.5 -0.1 +0.2
phage AgroPhage_B07 -0.4 +0.2 +0.1 -0.0 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.2 +0.2 +0.2 -0.1 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.2 +0.2 +0.2 -0.2 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 +0.3 +0.3 -0.5
carbon source D-Saccharic potassium salt (C) -0.1 -0.3 +0.1 -0.3 +0.7
nitrogen source 5-Aminolevulinic (N) +0.2 -0.2 -0.2 +0.1 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.0 +0.4 -0.1 -0.2
nitrogen source Nicotinamide (N) +0.2 -0.3 +0.1 +0.3 +0.1
nitrogen source Betaine (N) +0.2 -0.0 -0.3 -0.1 +0.6
phage phage 99.2 +0.0 -0.3 +0.1 -0.0 +0.7
nitrogen source L-Methionine (N) -0.1 +0.2 -0.1 +0.2 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.3 -0.0 -0.1 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 -0.0 +0.0 +0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 +0.5 +0.2 -0.2
carbon source D-Sorbitol (C) +0.1 +0.1 -0.1 +0.4 +0.5
nitrogen source Hydantoin (N) +0.1 +0.1 +0.5 +0.1 +0.4
nitrogen source DL-2-Aminobutyric (N) +0.0 +0.4 +0.7 -0.4 +0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.1 +0.2 +0.3 +0.1 +0.7
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