Fitness for 5 genes in Agrobacterium fabrum C58

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 953 experiments or choose conditions or try the comparative fitness browser

500 ntAtu5456 and Atu5457 are separated by 115 nucleotidesAtu5457 and Atu5458 overlap by 4 nucleotidesAtu5458 and Atu5459 are separated by 24 nucleotidesAtu5459 and Atu5460 are separated by 83 nucleotides Atu5456: Atu5456 - hypothetical protein, at 448,384 to 449,295 Atu5456 Atu5457: Atu5457 - dihydrodipicolinate synthase, at 449,411 to 450,319 Atu5457 Atu5458: Atu5458 - isomerase/lactonizing enzyme, at 450,316 to 451,482 Atu5458 Atu5459: Atu5459 - ABC transporter substrate binding protein (sugar), at 451,507 to 452,778 Atu5459 Atu5460: Atu5460 - ABC transporter membrane spanning protein, at 452,862 to 453,788 Atu5460
Group Condition Atu5456 Atu5457 Atu5458 Atu5459 Atu5460
nitrogen source 6-aminocaproic (N) -0.2 -0.4 -0.6 -0.2 -0.1
phage phage 100.2 -0.3 -0.2 -0.3 -0.3 -0.1
stress R2A with Zinc chloride 0.05 mM -0.2 -0.3 -0.1 -0.3 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.6 +0.2 -0.0 -0.3
nitrogen source 5-Aminovaleric (N) -0.4 -0.4 +0.3 -0.1 +0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.3 -0.3 -0.2 -0.0
nitrogen source DL-2-Aminobutyric (N) +0.6 -0.5 -0.3 -0.2 -0.1
lb LB +0.3 -0.3 -0.2 -0.2 +0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.5 +0.1 +0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +0.1 +0.3 +0.1 -0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.5 +0.1 -0.4 -0.0
phage phage 95.1 +0.3 -0.4 -0.1 +0.3 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 +0.1 -0.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 -0.3 +0.3 +0.4 -0.1
carbon source D-Saccharic potassium salt (C) -0.1 +0.7 +0.2 -0.2 -0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 +0.3 +0.4 -0.1
phage AgroPhage_C10 +0.1 +0.4 -0.3 +0.2 -0.1
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -0.1 +0.6 +0.2 -0.1 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 -0.4 +0.1 +0.0
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.2 +0.2 -0.1 +0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.6 +0.4 -0.1 -0.2
carbon source D-Sorbitol (C) +0.1 +0.3 -0.0 +0.5 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.4 +0.2 -0.2 -0.0
nitrogen source Putrescine (N) +0.5 +0.5 -0.2 +0.0 -0.0
carbon source D-Saccharic potassium salt (C) +0.5 +0.8 +0.0 -0.1 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.6 +0.1 -0.0 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.4 +0.3 +0.0 +0.0
carbon source D-Sorbitol (C) +0.5 +0.5 +0.4 -0.2 -0.1
nitrogen source Nicotinamide (N) +0.1 +0.3 +0.5 +0.2 +0.1
nitrogen source L-Valine (N) +0.3 +0.5 +0.3 -0.2 +0.2
remove
Atu5456
plot		 remove
Atu5457
plot		 remove
Atu5458		 remove
Atu5459
plot		 remove
Atu5460
plot