Fitness for 5 genes in Agrobacterium fabrum C58

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Atu5450	Atu5451	Atu5452	Atu5453	Atu5454
in planta	Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	+0.1	-2.3	-0.6	-0.3	-0.3
nitrogen source	nitrate (N)	-0.3	-1.6	-0.8	-0.1	-0.2
stress	R2A with tungstate 375 mM	+0.4	-3.2	+0.0	+0.1	-0.3
in planta	Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.4	-4.1	+0.4	+0.1	+0.5
carbon source	Methyl alpha-D-glucopyranoside (C)	-0.5	-2.0	-0.2	+0.1	-0.1
in planta	Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.3	-2.4	-0.0	-0.0	+0.1
stress	Chloramphenicol 12.5 ug/mL	-0.4	-1.3	-0.4	-0.2	-0.2
in planta	Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.3	-2.0	+0.0	-0.1	-0.2
no phage	P5L5	-0.1	-1.9	-0.3	+0.1	-0.1
nitrogen source	Urea (N)	-0.7	-1.0	-0.6	-0.3	+0.2
nitrogen source	3-aminobutyric (N)	-0.5	-1.4	-0.2	-0.1	+0.1
in planta	Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.0	-2.0	+0.1	+0.0	-0.2
carbon source	Dextrin from potato starch (C)	-0.0	-1.9	-0.3	+0.1	+0.2
lb	LB	-0.3	-1.5	-0.3	-0.1	+0.3
carbon source	Protocatechuic Acid (C)	-0.2	-1.9	+0.1	-0.1	+0.3
in planta	Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.6	-1.0	-0.5	-0.2	-0.2
	Atjh15	+0.4	-1.7	+0.1	+0.2	-0.0
in planta	Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.2	+1.1	-0.4	-0.0	-0.6
nitrogen source	6-aminocaproic (N)	-1.0	+1.1	-0.0	+0.0	+0.0
nitrogen source	Putrescine (N)	-0.5	+1.4	-0.3	-0.2	+0.1
phage	AgroPhage_F10	+0.2	+0.4	-0.7	+0.3	+0.7
r2a_control	R2A control	+0.3	+1.4	-0.3	+0.1	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.4	+1.5	-0.2	-0.0	+0.1
in planta	Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.5	+1.4	-0.3	+0.0	+0.8
stress	R2A with sodium fluoride 0.2 mM	-0.2	+1.8	-0.2	+0.1	-0.1
	No phage control	+0.2	+1.6	-0.2	+0.2	+0.1
stress	R2A with Nickel (II) chloride 0.05 mM	+0.0	+2.0	+0.1	+0.0	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+1.4	+0.6	+0.0	-0.1
stress	Chloramphenicol 12.5 ug/mL	+0.5	+1.7	+0.2	+0.1	-0.2
r2a_control	R2A control	+0.2	+1.5	+0.4	+0.2	+0.0