Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5434 and Atu5435 are separated by 19 nucleotidesAtu5435 and Atu5436 are separated by 243 nucleotidesAtu5436 and Atu5437 are separated by 311 nucleotidesAtu5437 and Atu5438 are separated by 81 nucleotides Atu5434: Atu5434 - hypothetical protein, at 427,209 to 428,132 Atu5434 Atu5435: Atu5435 - oxidoreductase, at 428,152 to 429,324 Atu5435 Atu5436: Atu5436 - myo-inositol catabolism protein, at 429,568 to 430,470 Atu5436 Atu5437: Atu5437 - hypothetical protein, at 430,782 to 431,174 Atu5437 Atu5438: Atu5438 - 3-oxoacyl-ACP reductase, at 431,256 to 431,987 Atu5438
Group Condition Atu5434 Atu5435 Atu5436 Atu5437 Atu5438
stress R2A with sodium iodate 30 mM -0.3 -0.1 -0.0 -0.6 -0.3
stress R2A with Bacitracin 0.6 mM -0.1 -0.1 -0.1 -0.6 -0.4
carbon source Sucrose (C) +0.1 -0.1 -0.0 -1.0 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.1 -0.3 -0.3 -0.4
nitrogen source 5-Aminolevulinic (N) -0.1 -0.2 +0.1 -0.8 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -0.2 -0.3 -0.6 +0.3
phage phage 100.3 +0.1 -0.2 +0.2 -0.8 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.2 +0.1 -0.5 -0.2
stress R2A with m-arsenite 0.8 mM +0.5 -0.0 -0.1 -0.3 -0.6
nitrogen source Putrescine (N) -0.4 -0.1 +0.4 +0.3 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.0 -0.2 -0.4 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 -0.3 -0.3 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 +0.2 -0.0 -0.7 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 +0.1 +0.2 -0.2 -0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 +0.2 -0.3 -0.3 -0.2
carbon source D-Saccharic potassium salt (C) +0.4 -0.2 -0.4 +0.6 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.0 +0.5 +0.4 -0.8
carbon source Rhamnogalacturonan - from potato (C) +0.3 -0.2 -0.2 +0.5 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.0 -0.2 +0.8 -0.4
phage AgroPhage_E04 +0.1 +0.2 +0.3 -0.5 +0.5
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.4 +0.2 +0.5 +0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.0 +0.0 +0.8 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.6 +0.7 -0.2 -0.2
carbon source D-Saccharic potassium salt (C) +0.6 +0.1 -0.0 +0.5 -0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.2 +0.2 +0.6 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.2 +0.4 -0.4 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 -0.1 +0.9 +0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.2 +0.3 +0.6 +0.6
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 -0.1 +0.6 +0.5
nitrogen source DL-2-Aminobutyric (N) -0.2 -0.2 -0.1 +0.9 +0.9
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