Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5433 and Atu5434 are separated by 133 nucleotidesAtu5434 and Atu5435 are separated by 19 nucleotidesAtu5435 and Atu5436 are separated by 243 nucleotidesAtu5436 and Atu5437 are separated by 311 nucleotides Atu5433: Atu5433 - LacI family transcription regulator, at 426,065 to 427,075 Atu5433 Atu5434: Atu5434 - hypothetical protein, at 427,209 to 428,132 Atu5434 Atu5435: Atu5435 - oxidoreductase, at 428,152 to 429,324 Atu5435 Atu5436: Atu5436 - myo-inositol catabolism protein, at 429,568 to 430,470 Atu5436 Atu5437: Atu5437 - hypothetical protein, at 430,782 to 431,174 Atu5437
Group Condition Atu5433 Atu5434 Atu5435 Atu5436 Atu5437
stress R2A with sodium iodate 30 mM -0.3 -0.3 -0.1 -0.0 -0.6
carbon source Sucrose (C) -0.2 +0.1 -0.1 -0.0 -1.0
nitrogen source 5-Aminolevulinic (N) -0.1 -0.1 -0.2 +0.1 -0.8
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.2 +0.0 -0.1 -0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.2 +0.3 -0.2 -0.3
phage phage 100.3 +0.1 +0.1 -0.2 +0.2 -0.8
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.0 -0.4 +0.0 +0.5
phage AgroPhage_E04 -0.2 +0.1 +0.2 +0.3 -0.5
nitrogen source Putrescine (N) -0.1 -0.4 -0.1 +0.4 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.5 +0.2 +0.4 -0.4
phage AgroPhage_F04 -0.3 -0.1 +0.3 +0.4 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.8 +0.2 -0.3 -0.3
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.0 -0.4 +0.2 +0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.2 +0.1 -0.1 +0.6
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.0 -0.2 +0.3 +0.6
carbon source Rhamnogalacturonan - from potato (C) +0.1 +0.3 -0.2 -0.2 +0.5
carbon source D-Saccharic potassium salt (C) +0.1 +0.4 -0.2 -0.4 +0.6
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.2 +0.1 +0.4 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.1 -0.1 -0.1 +0.9
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.7 +0.1 +0.2 -0.2
carbon source Methyl alpha-D-glucopyranoside (C) +0.4 +0.4 +0.1 -0.2 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.1 +0.0 +0.2 +0.7
nitrogen source DL-2-Aminobutyric (N) +0.5 -0.2 -0.2 -0.1 +0.9
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.5 -0.0 -0.2 +0.8
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 +0.0 +0.0 +0.8
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.0 +0.2 +0.2 +0.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.3 -0.0 +0.5 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 +0.6 +0.7 -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.2 -0.1 +0.2 +0.4 +0.5
carbon source D-Saccharic potassium salt (C) -0.1 +0.6 +0.1 -0.0 +0.5
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