Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5428 and Atu5429 are separated by 29 nucleotidesAtu5429 and Atu5430 are separated by 415 nucleotidesAtu5430 and Atu5431 are separated by 330 nucleotidesAtu5431 and Atu5432 are separated by 178 nucleotides Atu5428: Atu5428 - DNA-damage-inducible protein F, at 422,061 to 423,398 Atu5428 Atu5429: Atu5429 - transcriptional regulator, at 423,428 to 423,595 Atu5429 Atu5430: Atu5430 - hypothetical protein, at 424,011 to 424,433 Atu5430 Atu5431: Atu5431 - hypothetical protein, at 424,764 to 425,153 Atu5431 Atu5432: Atu5432 - hypothetical protein, at 425,332 to 425,640 Atu5432
Group Condition Atu5428 Atu5429 Atu5430 Atu5431 Atu5432
stress R2A with Gallium(III) chloride 0.02 mM +0.0 -0.0 -4.4 +0.2 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 -4.3 +0.1 N.D.
nitrogen source spermidine (N) -0.2 -0.7 -2.9 -0.3 N.D.
nitrogen source NAG (N) -0.1 -0.2 -3.5 -0.1 N.D.
r2a_control R2A control -0.0 +0.4 -4.1 -0.1 N.D.
stress R2A with Hydrogen peroxide 0.1 mM +0.3 -0.3 -3.6 -0.2 N.D.
nitrogen source L-Asparagine (N) -0.2 -0.2 -3.3 -0.0 N.D.
nitrogen source L-Arginine (N) -0.1 -0.1 -3.6 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.7 -4.0 +0.8 N.D.
nitrogen source D-Glucosamine Hydrochloride (N) -0.1 -0.3 -3.2 +0.1 N.D.
nitrogen source L-Leucine (N) +0.2 -0.3 -3.1 -0.1 N.D.
stress R2A with nitrate 375 mM -0.1 -0.0 -3.1 -0.1 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.3 -2.7 +0.1 N.D.
nitrogen source Urea (N) -0.1 -0.2 -2.9 +0.3 N.D.
phage AgroPhage_E04 +0.3 -0.3 -3.1 +0.2 N.D.
lb LB +0.2 +0.0 -2.8 -0.3 N.D.
nitrogen source 5-Aminovaleric (N) -0.2 +0.0 -3.1 +0.3 N.D.
nitrogen source L-Valine (N) +0.2 -0.7 -2.6 +0.3 N.D.
carbon source Dextrin from potato starch (C) -0.1 -0.9 -2.1 +0.4 N.D.
nitrogen source L-Valine (N) -0.1 +0.3 -2.9 +0.0 N.D.
phage AgroPhage_C04 -0.3 -0.1 -2.6 +0.4 N.D.
nitrogen source DL-2-Aminobutyric (N) -0.1 -1.0 -1.9 +0.4 N.D.
phage phage 100.3 -0.1 +0.4 -2.4 -0.2 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.4 -2.5 -0.4 N.D.
stress R2A with sodium fluoride 0.2 mM -0.1 +0.5 -2.4 -0.1 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.8 -2.9 +0.1 N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.4 +2.1 -0.2 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.2 +2.5 +0.5 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.4 +2.2 +0.3 N.D.
stress R2A with Vancomycin 0.009 mM +0.0 +0.5 +2.7 -0.1 N.D.
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