Fitness for 5 genes in Agrobacterium fabrum C58

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 953 experiments or choose conditions or try the comparative fitness browser

500 ntAtu5413 and Atu5414 are separated by 31 nucleotidesAtu5414 and Atu5415 overlap by 32 nucleotidesAtu5415 and Atu5418 are separated by 1020 nucleotidesAtu5418 and Atu5419 are separated by 386 nucleotides Atu5413: Atu5413 - ABC transporter membrane spanning protein, at 408,302 to 409,123 Atu5413 Atu5414: Atu5414 - Xaa-Pro dipeptidase, at 409,155 to 410,579 Atu5414 Atu5415: Atu5415 - hypothetical protein, at 410,548 to 411,255 Atu5415 Atu5418: Atu5418 - opine/octopine dehydrogenase, at 412,276 to 413,358 Atu5418 Atu5419: Atu5419 - LysR family transcriptional regulator, at 413,745 to 414,725 Atu5419
Group Condition Atu5413 Atu5414 Atu5415 Atu5418 Atu5419
carbon source Rhamnogalacturonan - from potato (C) -0.5 -0.2 -0.2 -0.3 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.3 -0.1 -0.3 -0.1 -0.5
nitrogen source L-Glutamic (N) -0.6 -0.3 -0.3 -0.0 -0.0
nitrogen source 6-aminocaproic (N) -0.3 -0.6 -0.3 -0.1 +0.1
nitrogen source 5-Aminolevulinic (N) -0.2 +0.2 -0.8 -0.1 -0.2
nitrogen source L-Valine (N) +0.1 +0.1 -0.7 -0.1 -0.2
phage AgroPhage_D04 -0.6 +0.0 -0.3 -0.2 +0.3
nitrogen source L-Ornithine (N) +0.2 -0.0 -0.5 -0.2 -0.2
r2a_control R2A control -0.3 +0.1 +0.2 -0.2 -0.3
stress R2A with Chlorite 0.2 mM +0.1 +0.2 -0.4 -0.3 -0.1
nophagecontrol No phage control +0.5 -0.1 -0.3 -0.1 -0.3
carbon source D-Saccharic potassium salt (C) -0.3 +0.3 -0.5 +0.3 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.1 -0.3 -0.0 -0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 -0.1 -0.1 -0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.2 +0.4 +0.1 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.2 -0.3 +0.3 +0.7
stress R2A with chromate 0.1 mM +0.4 +0.2 +0.3 -0.0 -0.2
nitrogen source Hydantoin (N) -0.0 +0.0 +0.5 -0.2 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.1 -0.1 +0.1 +0.9
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.2 +0.6 -0.0 -0.1
carbon source D-Saccharic potassium salt (C) +0.6 +0.2 -0.2 -0.2 +0.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.2 +0.2 +0.2 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.2 +0.6 -0.1 +0.2
phage AgroPhage_F10 +0.6 -0.0 +0.4 -0.1 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.3 +0.2 +0.2 +0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 +0.3 +0.1 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.1 +0.6 +0.2 +0.5
nitrogen source DL-2-Aminobutyric (N) +0.7 +0.6 +0.6 -0.1 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.4 +0.5 +0.1 +0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.6 +0.2 +0.2 +0.3
remove
Atu5413
plot		 remove
Atu5414
plot		 remove
Atu5415		 remove
Atu5418
plot		 remove
Atu5419
plot