Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5404 and Atu5406 are separated by 1430 nucleotidesAtu5406 and Atu5407 are separated by 145 nucleotidesAtu5407 and Atu5408 are separated by 103 nucleotidesAtu5408 and Atu5409 are separated by 3 nucleotides Atu5404: Atu5404 - transcriptional regulator, at 398,609 to 399,316 Atu5404 Atu5406: Atu5406 - GntR family transcriptional regulator, at 400,747 to 401,496 Atu5406 Atu5407: Atu5407 - hypothetical protein, at 401,642 to 402,772 Atu5407 Atu5408: Atu5408 - ABC transporter membrane spanning protein (amino acid), at 402,876 to 403,730 Atu5408 Atu5409: Atu5409 - ABC transporter substrate binding protein (amino acid), at 403,734 to 404,669 Atu5409
Group Condition Atu5404 Atu5406 Atu5407 Atu5408 Atu5409
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 +0.0 -0.5 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.3 -0.2 -0.2 -0.4
carbon source Rhamnogalacturonan - from potato (C) N.D. -0.2 -0.4 -0.2 -0.2
phage AgroPhage_C10 N.D. -0.3 -0.2 -0.1 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. -0.2 -0.2 +0.0 -0.4
carbon source Ribitol (C) N.D. +0.0 -0.2 -0.3 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.3 -0.3 -0.2 +0.1
nitrogen source Nicotinamide (N) N.D. +0.2 -0.2 -0.5 -0.2
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 -0.4 -0.2 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 -0.2 +0.3 -0.3
nitrogen source 5-Aminolevulinic (N) N.D. -0.0 +0.2 -0.7 +0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.3 -0.2 +0.2 -0.2
nitrogen source D-Glucosamine Hydrochloride (N) N.D. -0.4 +0.2 -0.2 +0.1
nitrogen source spermidine (N) N.D. -0.2 -0.2 -0.2 +0.3
nitrogen source Orotic (N) N.D. -0.4 -0.2 +0.2 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.4 +0.1 +0.5 -0.3
phage AgroPhage_B07 N.D. -0.2 +0.1 +0.3 -0.3
nitrogen source L-Ornithine (N) N.D. -0.5 +0.2 +0.2 +0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 +0.5 -0.0 -0.2
phage AgroPhage_F04 N.D. +0.3 -0.1 +0.4 -0.5
carbon source gluconate (C) N.D. -0.1 -0.3 +0.3 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 +0.2 -0.4 +0.3
carbon source D-Saccharic potassium salt (C) N.D. +0.5 -0.4 +0.0 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.3 -0.1 +0.4 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.2 +0.4 +0.3 +0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 +0.1 +0.4 +0.5
phage AgroPhage_C04 N.D. +0.1 +0.1 +0.6 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 +0.1 +0.6 +0.5
nophagecontrol No phage control N.D. +0.1 +0.2 +0.5 +0.2
nitrogen source DL-2-Aminobutyric (N) N.D. +0.2 +0.1 +0.5 +0.7
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