Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5402 and Atu5403 are separated by 195 nucleotidesAtu5403 and Atu5404 are separated by 302 nucleotidesAtu5404 and Atu5406 are separated by 1430 nucleotidesAtu5406 and Atu5407 are separated by 145 nucleotides Atu5402: Atu5402 - ABC transporter membrane spanning protein (sugar), at 395,886 to 396,779 Atu5402 Atu5403: Atu5403 - ABC transporter substrate binding protein (sugar), at 396,975 to 398,306 Atu5403 Atu5404: Atu5404 - transcriptional regulator, at 398,609 to 399,316 Atu5404 Atu5406: Atu5406 - GntR family transcriptional regulator, at 400,747 to 401,496 Atu5406 Atu5407: Atu5407 - hypothetical protein, at 401,642 to 402,772 Atu5407
Group Condition Atu5402 Atu5403 Atu5404 Atu5406 Atu5407
carbon source L-Sorbose (C) N.D. N.D. N.D. -0.2 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. N.D. -0.3 -0.3
nitrogen source Choline chloride (N) N.D. N.D. N.D. -0.6 -0.0
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.2 -0.4
carbon source Rhamnogalacturonan - from potato (C) N.D. N.D. N.D. -0.2 -0.4
nitrogen source Orotic (N) N.D. N.D. N.D. -0.4 -0.2
Atjh15 N.D. N.D. N.D. -0.5 -0.1
phage AgroPhage_C10 N.D. N.D. N.D. -0.3 -0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.3 -0.2
nitrogen source 5-Aminovaleric (N) N.D. N.D. N.D. -0.4 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.3 -0.2
carbon source Sucrose (C) N.D. N.D. N.D. -0.3 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.5 +0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. N.D. -0.1 -0.4
nitrogen source L-Ornithine (N) N.D. N.D. N.D. -0.5 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.4 +0.1
nitrogen source L-pyroglutamic (N) N.D. N.D. N.D. +0.1 -0.4
nitrogen source 2,6-diaminopimelic (N) N.D. N.D. N.D. -0.4 +0.2
nitrogen source 4-Aminobutyric (N) N.D. N.D. N.D. -0.3 +0.2
nitrogen source D-Glucosamine Hydrochloride (N) N.D. N.D. N.D. -0.4 +0.2
carbon source 2-Keto-D-gluconic hemicalcium salt (C) N.D. N.D. N.D. +0.2 -0.3
Atjh14 N.D. N.D. N.D. +0.5 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. N.D. +0.3 -0.2
No phage control N.D. N.D. N.D. +0.4 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.2 +0.4
carbon source D-Saccharic potassium salt (C) N.D. N.D. N.D. +0.5 -0.4
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.2 +0.5
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. +0.0 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +0.7 -0.1
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