Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5205 and Atu5206 are separated by 274 nucleotidesAtu5206 and Atu5207 are separated by 184 nucleotidesAtu5207 and Atu5208 are separated by 163 nucleotidesAtu5208 and Atu5209 are separated by 138 nucleotides Atu5205: Atu5205 - hypothetical protein, at 203,504 to 204,022 Atu5205 Atu5206: Atu5206 - LysR family transcriptional regulator, at 204,297 to 205,196 Atu5206 Atu5207: Atu5207 - hypothetical protein, at 205,381 to 206,214 Atu5207 Atu5208: Atu5208 - LysR family transcriptional regulator, at 206,378 to 207,277 Atu5208 Atu5209: Atu5209 - hypothetical protein, at 207,416 to 207,745 Atu5209
Group Condition Atu5205 Atu5206 Atu5207 Atu5208 Atu5209
carbon source Dextrin from potato starch (C) -0.7 -0.2 -0.1 N.D. N.D.
pH R2A pH 5.5 -0.5 -0.0 -0.3 N.D. N.D.
carbon source succinate (C) -0.1 -0.0 -0.7 N.D. N.D.
carbon source Rhamnogalacturonan - from potato (C) -0.2 +0.1 -0.6 N.D. N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.0 -0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 -0.1 +0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 +0.3 -0.3 N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.8 +0.0 +0.2 N.D. N.D.
stress R2A with silver chloride 5 mM -0.5 +0.1 -0.2 N.D. N.D.
carbon source D-Saccharic potassium salt (C) +0.4 -0.3 -0.7 N.D. N.D.
nitrogen source 6-aminocaproic (N) -0.4 -0.5 +0.4 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 +0.3 +0.0 N.D. N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.1 +0.3 N.D. N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 -0.5 N.D. N.D.
nitrogen source Betaine (N) +0.2 +0.1 -0.5 N.D. N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.0 +0.3 N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.2 -0.6 N.D. N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.3 -0.5 N.D. N.D.
no phage P4L5 -0.3 -0.2 +0.5 N.D. N.D.
carbon source D-Saccharic potassium salt (C) +0.7 -0.4 -0.2 N.D. N.D.
stress R2A with Tetracycline 0.002 mM +0.5 +0.1 -0.3 N.D. N.D.
nitrogen source DL-2-Aminobutyric (N) +0.3 +0.3 -0.4 N.D. N.D.
nitrogen source spermidine (N) -0.4 +0.1 +0.6 N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.9 -0.2 -0.4 N.D. N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.2 +0.6 N.D. N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.1 +0.6 N.D. N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.3 -0.2 N.D. N.D.
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.1 +0.8 N.D. N.D.
stress R2A with Vancomycin 0.009 mM +0.9 -0.0 +0.0 N.D. N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 +0.8 N.D. N.D.
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