Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5199 and Atu5200 are separated by 366 nucleotidesAtu5200 and Atu5201 are separated by 272 nucleotidesAtu5201 and Atu5202 are separated by 261 nucleotidesAtu5202 and Atu5203 are separated by 48 nucleotides Atu5199: Atu5199 - oxidoreductase, at 195,232 to 196,332 Atu5199 Atu5200: Atu5200 - efflux protein, at 196,699 to 198,057 Atu5200 Atu5201: Atu5201 - pirin, at 198,330 to 199,184 Atu5201 Atu5202: Atu5202 - alcohol dehydrogenase, at 199,446 to 200,564 Atu5202 Atu5203: Atu5203 - beta-lactamase, at 200,613 to 201,692 Atu5203
Group Condition Atu5199 Atu5200 Atu5201 Atu5202 Atu5203
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.4 -0.2 -0.1 -0.3
nitrogen source DL-2-Aminobutyric (N) -0.1 -0.3 -0.2 -0.4 -0.1
carbon source D-Sorbitol (C) -0.4 -0.4 -0.2 +0.1 -0.2
carbon source palatinose (C) -0.2 -0.3 -0.3 -0.1 -0.1
carbon source Dextrin from potato starch (C) -0.3 -0.1 -0.3 +0.0 -0.4
carbon source Dextrin from potato starch (C) +0.1 -0.1 -0.2 -0.4 -0.4
carbon source Xylitol (C) -0.2 -0.3 -0.3 +0.1 -0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.1 -0.5 -0.3 -0.2
phage AgroPhage_E04 -0.0 +0.1 +0.0 -0.4 -0.5
nitrogen source L-Phenylalanine (N) -0.1 +0.3 -0.2 -0.3 -0.5
carbon source 2-Keto-D-gluconic hemicalcium salt (C) +0.2 -0.4 -0.3 -0.0 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.3 -0.3 +0.1 +0.2 -0.3
carbon source L-(+)-Erythrulose (C) +0.0 -0.3 +0.2 +0.3 -0.4
carbon source D-Saccharic potassium salt (C) -0.2 -0.2 -0.2 +0.4 -0.1
nitrogen source L-Aspartic Acid (N) -0.3 -0.3 -0.1 +0.3 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 -0.2 +0.5 -0.1 -0.4
nitrogen source 6-aminocaproic (N) +0.0 +0.2 -0.2 +0.3 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -0.1 -0.1 +0.0 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 -0.1 +0.4 +0.1 -0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 +0.2 +0.4 +0.1
phage AgroPhage_E10 +0.1 -0.1 +0.2 +0.3 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.4 +0.5 -0.1 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.0 +0.1 +0.1 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.1 +0.0 +0.3 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.0 +0.1 +0.1 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.3 +0.3 -0.1 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.6 +0.0 +0.1 +0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 +0.4 +0.5 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.2 +0.4 +0.3 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 +0.3 +0.3 +0.9
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