Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5196 and Atu5197 are separated by 60 nucleotidesAtu5197 and Atu5198 are separated by 30 nucleotidesAtu5198 and Atu5199 are separated by 129 nucleotidesAtu5199 and Atu5200 are separated by 366 nucleotides Atu5196: Atu5196 - hypothetical protein, at 192,301 to 193,017 Atu5196 Atu5197: Atu5197 - LysR family transcriptional regulator, at 193,078 to 194,055 Atu5197 Atu5198: Atu5198 - putative oxidoreductase, at 194,086 to 195,102 Atu5198 Atu5199: Atu5199 - oxidoreductase, at 195,232 to 196,332 Atu5199 Atu5200: Atu5200 - efflux protein, at 196,699 to 198,057 Atu5200
Group Condition Atu5196 Atu5197 Atu5198 Atu5199 Atu5200
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.4 +0.2 -0.4 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.4 +0.0 -0.2 -0.3 -0.3
carbon source D-Sorbitol (C) +0.5 -0.2 -0.3 -0.4 -0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.2 -0.2 -0.3 -0.4
nophagecontrol No phage control -0.5 -0.4 +0.1 +0.0 +0.2
carbon source Cellohexaose (C) -0.3 -0.2 -0.3 +0.2 +0.1
nitrogen source Nicotinamide (N) -0.3 -0.6 +0.1 +0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -0.0 -0.1 -0.2 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -0.4 -0.2 -0.2 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.2 +0.1 +0.6 -0.1
carbon source palatinose (C) +0.5 -0.1 -0.0 -0.2 -0.3
nitrogen source DL-2-Aminobutyric (N) -0.3 -0.0 +0.6 -0.1 -0.3
nitrogen source L-Aspartic Acid (N) +0.5 +0.1 +0.0 -0.3 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.2 +0.2 +0.0 +0.4
carbon source Dextrin from potato starch (C) +0.5 +0.2 -0.2 -0.3 -0.1
stress R2A with Vancomycin 0.009 mM -0.5 +0.4 +0.0 +0.0 +0.3
carbon source D-Saccharic potassium salt (C) +0.6 -0.1 -0.2 -0.0 +0.1
stress R2A with G418 disolution 0.02 mM +0.5 +0.3 -0.1 -0.2 -0.1
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.4 +0.3 -0.1 -0.3 +0.1
phage AgroPhage_B01 +0.5 -0.4 -0.0 -0.0 +0.3
carbon source Xylobiose (C) +0.6 -0.2 -0.0 +0.2 -0.1
carbon source Xylobiose (C) +0.5 -0.1 +0.0 +0.2 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.1 +0.2 +0.3 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.5 +0.3 +0.2 +0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.2 +0.2 -0.1 -0.1 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 +0.1 +0.6 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.2 +0.1 +0.5 -0.1
carbon source D-Saccharic potassium salt (C) +1.2 +0.0 +0.1 -0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +0.4 +0.0 +0.2 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.2 +0.1 +0.3 -0.0
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