Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5184 and Atu5185 are separated by 167 nucleotidesAtu5185 and Atu5186 overlap by 20 nucleotidesAtu5186 and Atu5187 are separated by 106 nucleotidesAtu5187 and Atu5188 are separated by 194 nucleotides Atu5184: Atu5184 - LysR family transcriptional regulator, at 180,842 to 181,771 Atu5184 Atu5185: Atu5185 - short chain dehydrogenase, at 181,939 to 182,703 Atu5185 Atu5186: Atu5186 - hypothetical protein, at 182,684 to 182,869 Atu5186 Atu5187: Atu5187 - LysR family transcriptional regulator, at 182,976 to 183,902 Atu5187 Atu5188: Atu5188 - zinc-binding dehydrogenase, at 184,097 to 185,083 Atu5188
Group Condition Atu5184 Atu5185 Atu5186 Atu5187 Atu5188
stress R2A with Thallium(I) acetate 0.05 mM -0.1 -0.0 -1.2 -0.2 -0.1
nitrogen source 6-aminocaproic (N) +0.2 -0.1 -1.6 +0.2 -0.3
nitrogen source Ammonium chloride (N) -0.2 -0.3 -0.7 -0.2 -0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.3 -0.8 +0.3 -0.3
nitrogen source 5-Aminolevulinic (N) -0.5 +0.1 -0.5 -0.2 -0.3
nitrogen source Ethanolamine (N) -0.0 -0.3 -0.8 -0.5 +0.3
nitrogen source Orotic (N) -0.5 +0.2 -0.9 +0.0 -0.0
nitrogen source L-Methionine (N) -0.3 -0.1 -1.0 -0.4 +0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 -0.9 -0.0 +0.3
carbon source D-Mannose (C) -0.2 +0.1 -0.9 +0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.2 -0.8 -0.1 +0.4
nitrogen source L-Glutamic (N) +0.1 +0.3 -1.0 -0.1 -0.1
carbon source Methyl alpha-D-glucopyranoside (C) +0.4 -0.2 -0.9 +0.3 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.3 -1.0 -0.2 +0.4
nitrogen source Nicotinamide (N) +0.4 -0.3 -0.6 +0.1 -0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 +0.7 -0.5 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.1 -0.7 -0.2 +0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.0 +0.5 -0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.0 -0.8 +0.4 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.0 +0.7 -0.4 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.2 -0.3 -0.2 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.1 +0.8 +0.5 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.2 +0.6 +0.4 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 +1.1 +0.1 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.1 +1.8 +0.0 -0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 +1.4 -0.2 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.1 +1.6 -0.2 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 +1.5 -0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 +0.2 +1.5 +0.2 -0.2
no phage P2L5 -0.3 +0.0 +3.0 -0.1 +0.2
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