Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5178 and Atu5179 are separated by 297 nucleotidesAtu5179 and Atu5181 are separated by 637 nucleotidesAtu5181 and Atu5182 are separated by 95 nucleotidesAtu5182 and Atu5183 are separated by 85 nucleotides Atu5178: Atu5178 - ABC transporter nucleotide binding/ATPase, at 175,028 to 176,974 Atu5178 Atu5179: Atu5179 - hypothetical protein, at 177,272 to 177,562 Atu5179 Atu5181: Atu5181 - short chain dehydrogenase, at 178,200 to 178,937 Atu5181 Atu5182: Atu5182 - quinone oxidoreductase, at 179,033 to 179,968 Atu5182 Atu5183: Atu5183 - hypothetical protein, at 180,054 to 180,650 Atu5183
Group Condition Atu5178 Atu5179 Atu5181 Atu5182 Atu5183
phage AgroPhage_C10 -0.3 -0.5 -0.3 +0.0 -0.5
nitrogen source 6-aminocaproic (N) -0.4 +0.1 -0.6 -0.3 -0.3
nitrogen source L-Aspartic Acid (N) -0.2 -0.8 -0.4 -0.1 +0.1
phage AgroPhage_E10 +0.3 -0.0 -0.3 -0.0 -1.2
phage AgroPhage_D04 +0.2 -0.0 -0.5 -0.3 -0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 -0.4 -0.5 -0.1 -0.3
nitrogen source D-Glucosamine Hydrochloride (N) -0.0 -0.0 -0.3 -0.1 -0.8
nitrogen source 5-Aminolevulinic (N) +0.0 +0.0 -0.2 -0.3 -0.7
phage AgroPhage_H04 +0.1 +0.1 -0.3 -0.1 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.2 -0.3 -0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.2 +0.4 -0.3 -0.2
stress R2A with Tetracycline 0.002 mM +0.1 +0.4 -0.3 -0.2 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.1 -0.0 -0.3 -0.4
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.4 +0.3 -0.0 -0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.5 -0.2 +0.1 -0.5
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.4 -0.3 -0.3 +0.4 -0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 +0.5 -0.2 +0.3
nitrogen source Carnitine Hydrochloride (N) +0.1 -0.5 +0.4 -0.1 +0.3
nitrogen source DL-2-Aminobutyric (N) -0.0 -0.2 +0.5 +0.6 -0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.5 +0.3 +0.0 -0.4
stress R2A with Sisomicin 0.001 mM +0.1 -0.2 -0.1 +0.2 +0.6
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.3 -0.3 +0.2 +0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.6 +0.3 -0.0 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.3 -0.0 +0.2 -0.2
nitrogen source Nicotinamide (N) -0.1 +0.3 +0.3 +0.1 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.1 +0.2 -0.1 +1.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.4 -0.0 +0.2 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.3 +0.8 -0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 +1.2 +0.6 +0.0 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.1 +0.6 +0.6 +0.2
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