Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5177 and Atu5178 are separated by 9 nucleotidesAtu5178 and Atu5179 are separated by 297 nucleotidesAtu5179 and Atu5181 are separated by 637 nucleotidesAtu5181 and Atu5182 are separated by 95 nucleotides Atu5177: Atu5177 - efflux protein, at 173,825 to 175,018 Atu5177 Atu5178: Atu5178 - ABC transporter nucleotide binding/ATPase, at 175,028 to 176,974 Atu5178 Atu5179: Atu5179 - hypothetical protein, at 177,272 to 177,562 Atu5179 Atu5181: Atu5181 - short chain dehydrogenase, at 178,200 to 178,937 Atu5181 Atu5182: Atu5182 - quinone oxidoreductase, at 179,033 to 179,968 Atu5182
Group Condition Atu5177 Atu5178 Atu5179 Atu5181 Atu5182
nitrogen source L-Aspartic Acid (N) -0.0 -0.2 -0.8 -0.4 -0.1
phage AgroPhage_C10 -0.3 -0.3 -0.5 -0.3 +0.0
carbon source Rhamnogalacturonan - from potato (C) -0.3 -0.2 -0.4 +0.0 -0.3
nitrogen source 6-aminocaproic (N) +0.1 -0.4 +0.1 -0.6 -0.3
stress R2A with Tetracycline 0.002 mM -0.2 -0.3 -0.4 -0.2 -0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 +0.1 -0.4 -0.5 -0.1
carbon source Ribitol (C) -0.2 -0.3 +0.0 -0.3 -0.2
carbon source D-Sorbitol (C) +0.1 -0.1 -0.6 -0.2 -0.1
phage AgroPhage_D04 -0.2 +0.2 -0.0 -0.5 -0.3
stress R2A with G418 disolution 0.02 mM +0.1 -0.2 -0.5 -0.2 +0.1
phage AgroPhage_B07 -0.2 +0.2 -0.2 -0.4 -0.0
nitrogen source L-Methionine (N) -0.5 +0.1 -0.1 +0.1 -0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.2 -0.2 +0.5 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 -0.1 -0.2 +0.4 -0.3
phage AgroPhage_D10 -0.2 +0.3 +0.2 -0.3 -0.1
nitrogen source Carnitine Hydrochloride (N) -0.0 +0.1 -0.5 +0.4 -0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.0 +0.4 -0.3 -0.3 +0.4
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 -0.4 +0.3 -0.0
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.0 +0.3 -0.3 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.2 +0.2 +0.5 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.1 +0.5 +0.3 +0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.3 +0.1 -0.2 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 +0.2 +0.2 +0.4 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.5 +0.3 -0.0 +0.2
nitrogen source DL-2-Aminobutyric (N) +0.1 -0.0 -0.2 +0.5 +0.6
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 +0.3 +0.3 +0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.0 +0.6 +0.3 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.2 +0.3 +0.8 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.4 +0.1 +0.6 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +0.2 +1.2 +0.6 +0.0
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