Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5168 and Atu5169 are separated by 3 nucleotidesAtu5169 and Atu5170 overlap by 1 nucleotidesAtu5170 and Atu5171 are separated by 14 nucleotidesAtu5171 and Atu5172 are separated by 8 nucleotides Atu5168: Atu5168 - type IV secretion protein AvhB7, at 166,112 to 166,378 Atu5168 Atu5169: Atu5169 - type IV secretion protein AvhB8, at 166,382 to 167,053 Atu5169 Atu5170: Atu5170 - type IV secretion protein AvhB9, at 167,053 to 167,904 Atu5170 Atu5171: Atu5171 - type IV secretion protein AvhB10, at 167,919 to 169,091 Atu5171 Atu5172: Atu5172 - type IV secretion protein AvhB11, at 169,100 to 170,110 Atu5172
Group Condition Atu5168 Atu5169 Atu5170 Atu5171 Atu5172
phage AgroPhage_D10 N.D. -0.6 -0.6 -0.2 -0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.4 -0.8 +0.1 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.3 -0.5 -0.3 -0.3
carbon source Dextrin from potato starch (C) N.D. +0.2 -0.3 -0.4 -0.5
nitrogen source spermidine (N) N.D. -0.8 +0.3 -0.1 -0.2
nitrogen source L-Ornithine (N) N.D. +0.1 -0.4 -0.8 +0.2
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 -0.2 -0.3 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.8 +0.1 +0.3 -0.3
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.5 -0.1 -0.4 +0.4
carbon source D-Sorbitol (C) N.D. +0.4 -0.2 -0.6 -0.3
no phage P1L4 N.D. +0.2 -0.6 -0.4 +0.3
phage AgroPhage_H03 N.D. +0.7 -0.6 -0.5 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.6 -0.8 +0.8 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.5 +0.2 +0.4 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.8 -0.1 -0.4 -0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 +0.1 -0.7 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.8 +0.2 +0.3 +0.3
nitrogen source L-Glutamic (N) N.D. +0.8 -0.6 -0.1 -0.2
nitrogen source Ammonium chloride (N) N.D. +0.6 +0.3 -0.6 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.5 +0.1 +0.9 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 +0.5 -0.5 +0.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.6 +0.4 -0.5 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.6 +0.2 +0.6 +0.3
carbon source D-Saccharic potassium salt (C) N.D. +0.2 -0.5 +0.9 +0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.8 -0.3 +0.0 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.6 +0.6 -0.5 +0.2
carbon source D-Sorbitol (C) N.D. +1.0 +0.1 +0.2 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.8 +0.6 +0.0 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.4 +0.3 +0.4 +0.4
nitrogen source DL-2-Aminobutyric (N) N.D. +0.8 +0.1 +0.7 +0.2
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