Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5166 and Atu5167 are separated by 234 nucleotidesAtu5167 and Atu5168 are separated by 35 nucleotidesAtu5168 and Atu5169 are separated by 3 nucleotidesAtu5169 and Atu5170 overlap by 1 nucleotides Atu5166: Atu5166 - type IV secretion protein AvhB5, at 164,208 to 164,906 Atu5166 Atu5167: Atu5167 - type IV secretion protein AvhB6, at 165,141 to 166,076 Atu5167 Atu5168: Atu5168 - type IV secretion protein AvhB7, at 166,112 to 166,378 Atu5168 Atu5169: Atu5169 - type IV secretion protein AvhB8, at 166,382 to 167,053 Atu5169 Atu5170: Atu5170 - type IV secretion protein AvhB9, at 167,053 to 167,904 Atu5170
Group Condition Atu5166 Atu5167 Atu5168 Atu5169 Atu5170
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 N.D. -0.6 -0.8
carbon source Rhamnogalacturonan - from potato (C) -0.5 -1.0 N.D. -0.6 +0.1
phage AgroPhage_D10 +0.1 -0.9 N.D. -0.6 -0.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.4 N.D. -0.8 +0.0
nophagecontrol No phage control -0.5 -0.8 N.D. -0.6 +0.1
nitrogen source L-Isoleucine (N) -0.4 -0.9 N.D. -0.5 -0.0
lb_tomato_root LB_Tomato_root -0.5 -0.7 N.D. -0.4 -0.2
carbon source Cellopentaose (C) -0.7 -0.3 N.D. -0.4 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.4 N.D. -0.8 +0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -1.3 N.D. +0.8 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.2 N.D. -0.8 +0.1
nitrogen source D-Glucosamine Hydrochloride (N) -0.8 +0.2 N.D. -0.4 -0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.0 N.D. -0.9 +0.2
lb LB -0.3 +0.4 N.D. -0.7 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.2 N.D. +0.6 -0.5
carbon source D-Sorbitol (C) -0.4 -1.1 N.D. +1.0 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 -0.1 N.D. -0.9 +0.1
nitrogen source L-Glutamic (N) -0.4 +0.2 N.D. +0.8 -0.6
nitrogen source Ammonium chloride (N) -0.6 -0.3 N.D. +0.6 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.6 N.D. +0.4 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.0 -0.2 N.D. -0.8 +0.2
nitrogen source Nicotinamide (N) +0.3 -0.6 N.D. +0.7 +0.1
phage AgroPhage_E04 +0.6 +0.4 N.D. +0.4 -0.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 -0.6 N.D. +0.6 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.2 N.D. +0.8 +0.6
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.3 +0.0 N.D. -0.2 +0.3
phage AgroPhage_F10 +0.5 +0.1 N.D. +0.9 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +0.4 N.D. +0.8 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.9 -0.4 N.D. +0.6 +0.6
phage Phage 95.2 + bacteria +0.4 +0.8 N.D. +0.2 +0.4
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