Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5164 and Atu5165 are separated by 100 nucleotidesAtu5165 and Atu5166 overlap by 1 nucleotidesAtu5166 and Atu5167 are separated by 234 nucleotidesAtu5167 and Atu5168 are separated by 35 nucleotides Atu5164: Atu5164 - type IV secretion protein AvhB3, at 161,493 to 161,834 Atu5164 Atu5165: Atu5165 - type IV secretion protein AvhB4, at 161,935 to 164,208 Atu5165 Atu5166: Atu5166 - type IV secretion protein AvhB5, at 164,208 to 164,906 Atu5166 Atu5167: Atu5167 - type IV secretion protein AvhB6, at 165,141 to 166,076 Atu5167 Atu5168: Atu5168 - type IV secretion protein AvhB7, at 166,112 to 166,378 Atu5168
Group Condition Atu5164 Atu5165 Atu5166 Atu5167 Atu5168
phage AgroPhage_D04 -2.7 -0.2 -0.1 -1.0 N.D.
nitrogen source 5-Aminovaleric (N) -2.8 -0.3 -0.2 -0.5 N.D.
nophagecontrol No phage control -3.1 -0.1 -0.1 -0.2 N.D.
nitrogen source L-Arginine (N) -3.4 -0.1 +0.2 +0.0 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.8 -0.1 -0.1 -0.1 N.D.
nitrogen source D-Glucosamine Hydrochloride (N) -2.5 +0.1 -0.8 +0.2 N.D.
nophagecontrol No phage control -1.3 -0.4 -0.5 -0.8 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.0 -0.3 -0.6 -0.0 N.D.
nitrogen source 6-aminocaproic (N) -1.9 -0.1 -0.4 -0.4 N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -3.3 +0.4 +0.2 -0.1 N.D.
carbon source Rhamnogalacturonan - from potato (C) -1.2 -0.0 -0.5 -1.0 N.D.
stress R2A with Phosphomycin 50 mM -2.2 -0.0 -0.2 -0.3 N.D.
carbon source Ribitol (C) -2.1 +0.1 -0.3 -0.4 N.D.
no phage P5L5 -2.1 -0.0 -0.4 -0.0 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.3 +0.4 -0.4 -0.2 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 +0.3 -0.7 -1.3 N.D.
nitrogen source 5-Aminolevulinic (N) -2.2 -0.2 +0.4 -0.4 N.D.
carbon source Xylobiose (C) -1.9 +0.1 -0.3 -0.3 N.D.
nitrogen source D-Glucosamine Hydrochloride (N) -1.4 +0.1 -0.6 +0.3 N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.0 +0.3 +0.3 -0.3 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.6 +0.1 +0.4 -0.6 N.D.
nitrogen source DL-2-Aminobutyric (N) -1.5 +0.9 -0.1 -0.5 N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.2 +0.4 +1.3 +0.0 N.D.
Atjh14 +1.2 +0.1 -0.6 -0.7 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +2.2 +0.3 -0.1 -0.6 N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +2.0 +0.5 +0.2 -0.2 N.D.
phage AgroPhage_E04 +1.5 +0.1 +0.6 +0.4 N.D.
stress Erythromycin 12.5 ug/mL +0.6 +0.8 +0.8 +0.5 N.D.
stress Erythromycin 6.25 ug/mL +1.5 +0.4 +0.5 +0.3 N.D.
stress Erythromycin 12.5 ug/mL +0.7 +1.2 +0.8 +0.9 N.D.
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