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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu5122 and Atu5123 overlap by 4 nucleotides
Atu5123 and Atu5124 overlap by 1 nucleotides
Atu5124 and Atu5125 are separated by 114 nucleotides
Atu5125 and Atu5126 are separated by 205 nucleotides
Atu5122: Atu5122 - 3-ketoacyl-ACP reductase, at 128,425 to 129,204
Atu5122
Atu5123: Atu5123 - acetolactate synthase catalytic subunit, at 129,201 to 130,916
Atu5123
Atu5124: Atu5124 - glutamate-1-semialdehyde aminotransferase, at 130,916 to 132,250
Atu5124
Atu5125: Atu5125 - GntR family transcriptional regulator, at 132,365 to 133,054
Atu5125
Atu5126: Atu5126 - ABC transporter nucleotide binding/ATPase(putrescine), at 133,260 to 134,372
Atu5126
Group
Condition
Atu5122
Atu5123
Atu5124
Atu5125
Atu5126
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.2
-0.7
-0.6
-3.3
+0.1
in planta
Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.2
-0.7
-0.6
-2.8
-0.2
in planta
Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.1
-0.6
-0.8
-2.4
-0.0
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.6
-1.1
-0.9
-1.4
+0.0
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.5
-0.9
-1.0
-2.5
-0.1
in planta
Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.2
-0.4
-0.6
-2.3
-0.1
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.0
-1.0
-0.5
-2.1
-0.0
in planta
Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.3
-0.7
-0.6
-2.2
+0.1
in planta
Bethi_Library_OD0.01
-0.2
-1.0
-0.8
-1.3
-0.3
in planta
Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.2
-0.3
-0.2
-3.5
+0.3
in planta
Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.1
-0.5
-0.7
-2.4
+0.0
in planta
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.1
-0.3
-0.6
-2.3
-0.1
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.1
-1.2
-1.0
-1.2
-0.2
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.7
-0.9
-0.8
-2.8
+0.4
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.6
-0.8
-0.8
-2.3
-0.0
in planta
Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.0
-0.4
-0.5
-2.4
+0.3
in planta
Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.5
-1.2
-0.8
-1.3
+0.0
in planta
Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.1
-0.5
-0.5
-2.1
+0.3
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.6
-0.8
-0.9
-1.5
+0.1
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.7
-0.9
-0.8
-1.6
+0.1
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.9
-0.6
-0.5
-2.1
-0.1
in planta
Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.1
-0.5
-0.6
-1.9
+0.5
stress
Erythromycin 12.5 ug/mL
-0.4
-0.5
-1.2
-0.8
+0.6
in planta
Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.7
-0.7
-0.5
-1.2
+0.3
nitrogen source
5-Aminovaleric (N)
+1.1
+0.8
-0.7
-1.7
+0.1
nitrogen source
spermidine (N)
+1.3
+0.8
-1.3
-0.1
+0.2
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075
+0.8
+0.6
+1.2
-1.1
-0.1
nitrogen source
spermidine (N)
+1.7
+1.0
-1.4
+0.2
+0.0
nitrogen source
6-aminocaproic (N)
+2.0
+2.0
-0.0
-0.3
-0.1
nitrogen source
6-aminocaproic (N)
+1.7
+2.1
+0.5
-0.2
+0.0
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