Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5085 and Atu8047 are separated by 108 nucleotidesAtu8047 and Atu5086 are separated by 303 nucleotidesAtu5086 and Atu5087 overlap by 4 nucleotidesAtu5087 and Atu5088 are separated by 826 nucleotides Atu5085: Atu5085 - metallo-beta-lactamase, at 86,925 to 87,884 Atu5085 Atu8047: Atu8047 - hypothetical protein, at 87,993 to 88,262 Atu8047 Atu5086: Atu5086 - hypothetical protein, at 88,566 to 90,008 Atu5086 Atu5087: Atu5087 - two component sensor kinase, at 90,005 to 91,057 Atu5087 Atu5088: Atu5088 - hypothetical protein, at 91,884 to 92,117 Atu5088
Group Condition Atu5085 Atu8047 Atu5086 Atu5087 Atu5088
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.8 -0.5 -0.1 -1.4
nitrogen source spermidine (N) +0.0 -0.6 +0.0 +0.1 -2.2
nitrogen source 6-aminocaproic (N) -0.5 -0.5 -0.4 +0.1 -1.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 -0.2 +0.2 -1.7
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -1.5 -0.2 -0.2 -0.0
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.5 -0.1 -0.3 -0.6
lb_wheat LB_wheat -0.2 -0.3 -0.4 -0.3 -0.8
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.6 -0.6 +0.5 -1.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.6 -0.1 -0.2 -0.8
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.1 -0.2 -0.2 -1.4
stress R2A with m-arsenite 0.8 mM -0.2 -0.6 +0.0 +0.1 -1.1
nitrogen source Putrescine (N) -0.3 -0.6 -0.0 +0.2 -0.8
stress R2A with Cesium chloride 1.75 mM +0.0 -0.2 +0.1 +0.0 -1.5
nitrogen source spermidine (N) +0.2 -0.2 -0.1 -0.2 -1.1
nitrogen source 5-Aminovaleric (N) -0.2 +0.5 -0.2 -0.2 -1.1
nitrogen source Putrescine (N) -0.4 -0.8 -0.1 -0.2 +0.4
nitrogen source Hydantoin (N) +0.1 -0.4 +0.0 +0.4 -1.0
nitrogen source L-Glutamic (N) -0.2 +0.4 -0.1 +0.3 -1.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.8 +0.0 -0.3 +0.8
No phage control -0.0 +0.7 +0.0 -0.3 -1.0
nitrogen source L-Asparagine (N) +0.1 +0.5 -0.1 +0.0 -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.9 +0.1 -0.2 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.8 -0.3 +0.1 +0.8
r2a control R2A control -0.1 -0.5 -0.1 -0.1 +0.9
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.7 +0.2 +0.7 +0.3
phage AgroPhage_D04 -0.0 -0.5 +0.3 -0.4 +1.2
nitrogen source DL-2-Aminobutyric (N) +0.5 +0.6 +0.1 +0.8 -0.8
carbon source D-Saccharic potassium salt (C) +0.2 -0.4 +0.4 -0.0 +1.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 -0.1 -0.0 +1.7
carbon source Rhamnogalacturonan - from potato (C) +0.3 +0.4 -0.3 +0.3 +1.0
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