Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5074 and Atu5075 are separated by 60 nucleotidesAtu5075 and Atu5076 are separated by 3 nucleotidesAtu5076 and Atu5077 are separated by 173 nucleotidesAtu5077 and Atu8057 are separated by 412 nucleotides Atu5074: Atu5074 - iron alcohol dehydrogenase, at 74,057 to 75,178 Atu5074 Atu5075: Atu5075 - GntR family transcriptional regulator, at 75,239 to 75,943 Atu5075 Atu5076: Atu5076 - hypothetical protein, at 75,947 to 76,975 Atu5076 Atu5077: Atu5077 - hypothetical protein, at 77,149 to 77,502 Atu5077 Atu8057: Atu8057 - hypothetical protein, at 77,915 to 78,244 Atu8057
Group Condition Atu5074 Atu5075 Atu5076 Atu5077 Atu8057
carbon source D-Saccharic potassium salt (C) +0.6 -1.3 -0.1 +0.0 -2.9
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -1.1 -0.3 -0.5 -1.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.4 -0.1 +0.0 -1.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -1.1 -0.3 -0.2 -0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -1.0 -0.2 -0.3 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -1.2 -0.1 -0.1 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 -0.6 -0.3 -0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -1.1 -0.4 -0.3 -0.2
carbon source L-ascorbate (C) -0.0 -1.2 -0.2 -0.0 -0.4
stress R2A with Oxytetracycline 0.0002 mM -0.0 -0.7 -0.2 -0.5 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.8 -0.5 -0.3 +0.3
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.5 -0.1 -0.7 -0.1
carbon source Dextrin from potato starch (C) +0.1 -0.8 -0.2 -0.3 -0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -1.3 -0.2 -0.1 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -1.1 -0.2 +0.2 -0.4
carbon source D-Galacturonic Acid (C) -0.0 -1.7 +0.2 -0.0 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -1.3 -0.2 -0.1 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -1.0 -0.1 -0.2 +0.2
carbon source D-Galacturonic Acid (C) +0.1 -1.3 +0.3 +0.1 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.8 +0.0 +0.7 -1.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.9 -0.1 -0.2 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.9 -0.2 -0.1 +0.4
carbon source D-Saccharic potassium salt (C) +0.0 -1.3 -0.2 -0.2 +0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -1.2 +0.1 +0.5 -0.2
nitrogen source L-Methionine (N) -0.3 +0.6 -0.1 -0.8 +0.6
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -1.1 -0.0 +0.2 +1.2
nitrogen source L-Ornithine (N) +0.0 +0.6 +0.4 -0.6 +0.3
nitrogen source Ammonium chloride (N) -0.5 +0.4 +0.0 +0.6 +0.5
nitrogen source Orotic (N) +0.1 +0.5 -0.1 +0.3 +1.0
nitrogen source 5-Aminolevulinic (N) +0.1 +0.4 +0.4 +0.3 +0.7
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