Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5069 and Atu5070 are separated by 14 nucleotidesAtu5070 and Atu5071 are separated by 195 nucleotidesAtu5071 and Atu8046 are separated by 77 nucleotidesAtu8046 and Atu5072 are separated by 121 nucleotides Atu5069: Atu5069 - ABC transporter membrane spanning protein (oligopeptide), at 67,960 to 68,907 Atu5069 Atu5070: Atu5070 - ABC transporter membrane spanning protein (oligopeptide), at 68,922 to 69,836 Atu5070 Atu5071: Atu5071 - ABC transporter substrate binding protein (dipeptide), at 70,032 to 71,549 Atu5071 Atu8046: Atu8046 - hypothetical protein, at 71,627 to 71,779 Atu8046 Atu5072: Atu5072 - hypothetical protein, at 71,901 to 73,091 Atu5072
Group Condition Atu5069 Atu5070 Atu5071 Atu8046 Atu5072
carbon source Dextrin from potato starch (C) +0.1 -0.3 -0.0 -1.3 -0.5
No phage control -0.3 -0.2 +0.1 -1.6 +0.1
nitrogen source Carnitine Hydrochloride (N) +0.2 -0.6 -0.3 -1.0 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 -0.2 -0.8 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.2 -0.0 -0.5 -0.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.1 -0.1 -1.2 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.2 +0.0 -1.1 -0.2
stress R2A with Vancomycin 0.009 mM -0.5 -0.3 +0.0 -0.7 +0.1
stress R2A with Tetracycline 0.002 mM +0.1 -0.4 -0.2 -0.9 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 -0.1 -1.3 +0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.3 +0.1 -1.0 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.0 -0.2 -1.0 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.0 +0.4 -0.6 -0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.0 +0.2 -1.0 -0.1
nitrogen source L-Isoleucine (N) -0.4 -0.3 -0.3 +0.8 +0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.5 +0.2 +1.4 -0.2
phage AgroPhage_E04 -0.2 -0.0 +0.0 +1.2 -0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 +0.3 +0.8 -0.2
stress Chloramphenicol 12.5 ug/mL +0.3 +0.6 +0.0 -0.3 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.1 +0.1 +0.8 -0.2
phage AgroPhage_A01 +0.1 -0.2 +0.0 +0.9 +0.2
carbon source L-Arabinose (C) +0.3 +0.1 -0.2 +1.1 -0.1
stress R2A with m-arsenite 0.8 mM -0.2 +0.1 +0.1 +0.8 +0.2
phage phage 95.1 -0.1 +0.2 +0.0 +1.1 +0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.0 +0.1 +1.3 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +0.0 -0.1 +1.4 -0.2
Atjh15 +0.2 +0.2 +0.1 +0.9 -0.0
phage phage 100.3 +0.3 -0.1 +0.1 +1.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 +0.5 +0.3 +0.5 +0.3
nitrogen source DL-2-Aminobutyric (N) +0.6 +0.2 +0.4 +0.2 +0.8
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