Fitness for 5 genes in Agrobacterium fabrum C58

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Atu5044	Atu5045	Atu5046	Atu5047	Atu5048
nitrogen source	Putrescine (N)	-0.1	-2.9	-0.2	+0.0	+0.2
nitrogen source	Ethanolamine (N)	+0.0	-3.0	-0.1	+0.3	+0.1
nitrogen source	L-Glutamic (N)	+0.1	-2.0	-1.1	+0.2	+0.2
carbon source	D-Glucose (C)	-0.0	-2.1	-0.1	-0.4	+0.1
carbon source	Rhamnogalacturonan - from potato (C)	-0.0	-2.1	+0.5	-0.8	-0.1
nitrogen source	L-Aspartic Acid (N)	+0.0	-1.1	-0.6	-0.2	-0.4
nitrogen source	L-Alanine (N)	+0.1	-1.9	-0.2	+0.1	-0.2
carbon source	Methyl alpha-D-glucopyranoside (C)	-0.1	-1.9	+0.3	-0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	-1.9	-0.1	+0.2	-0.2
nitrogen source	5-Aminolevulinic (N)	-0.3	-1.5	-0.2	+0.3	-0.2
nitrogen source	Putrescine (N)	-0.1	-1.7	-0.2	-0.0	+0.2
carbon source	acetate (C)	-0.1	-1.9	+0.2	-0.0	+0.1
nophagecontrol	No phage control	+0.0	-1.3	-0.5	+0.1	+0.2
nitrogen source	L-Valine (N)	+0.3	-2.0	-0.1	+0.2	+0.1
nitrogen source	5-Aminolevulinic (N)	-0.1	-1.2	+0.8	-0.1	-0.6
nitrogen source	DL-2-Aminobutyric (N)	+0.1	-1.5	-0.7	-0.6	+1.5
no phage	P4L4	+0.2	-1.3	+0.6	-0.3	-0.2
phage	AgroPhage_E04	-0.2	-1.2	+0.5	-0.3	+0.1
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.0	-1.3	-0.2	+0.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-1.5	+0.0	+0.3	+0.2
in planta	Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	+0.1	-1.4	-0.0	+0.4	+0.4
in planta	Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	+0.2	-1.4	+0.6	-0.1	+0.2
in planta	Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.0	-1.1	+0.6	-0.4	+0.5
in planta	Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.1	-1.0	+1.0	-0.1	-0.1
carbon source	succinate (C)	+0.1	-1.2	+0.4	+0.4	+0.2
no phage	P2L5	+0.3	+0.5	-0.1	-1.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	+2.0	+0.4	-0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+2.2	+0.1	+0.1	+0.1
in planta	Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	+0.2	-0.2	+1.1	+1.0	+0.5
in planta	Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.0	+0.8	+1.9	+0.4	-0.1