Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5032 and Atu5033 are separated by 31 nucleotidesAtu5033 and Atu5034 are separated by 594 nucleotidesAtu5034 and Atu5035 are separated by 74 nucleotidesAtu5035 and Atu5036 are separated by 50 nucleotides Atu5032: Atu5032 - hypothetical protein, at 32,772 to 33,533 Atu5032 Atu5033: Atu5033 - hypothetical protein, at 33,565 to 34,635 Atu5033 Atu5034: Atu5034 - hypothetical protein, at 35,230 to 35,457 Atu5034 Atu5035: Atu5035 - hypothetical protein, at 35,532 to 36,428 Atu5035 Atu5036: Atu5036 - hypothetical protein, at 36,479 to 36,865 Atu5036
Group Condition Atu5032 Atu5033 Atu5034 Atu5035 Atu5036
nitrogen source Putrescine (N) -0.3 -0.0 -2.7 +0.4 +0.0
nitrogen source L-Methionine (N) -0.1 -0.2 -1.7 -0.0 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 -0.8 -0.7 -0.1
pH R2A pH 5.5 -0.5 -0.5 +0.1 -0.7 -0.3
phage Phage 95.3 + bacteria -0.8 -0.2 -0.6 +0.1 -0.3
pH R2A pH 5.5 -0.7 -0.5 +0.8 -0.8 -0.4
nitrogen source 6-aminocaproic (N) -0.3 -0.1 -1.6 +0.5 +0.0
nitrogen source Orotic (N) -0.1 -0.0 -1.5 +0.0 +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 -1.1 +0.3 -0.0
phage phage 95.1 -1.0 -0.6 +0.3 +0.1 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.0 -0.4 -0.9 +0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.2 +0.1 -1.2 -0.0 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.3 -1.5 -0.2 +0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.1 -0.9 +0.5 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.1 -0.6 -0.7 +0.5
phage Phage 95.3 + bacteria -0.7 -0.3 +1.0 -0.1 -0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.3 -1.0 +0.4 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.0 -0.9 +0.5 +0.2
nitrogen source L-Methionine (N) +0.2 -0.1 -0.9 +0.2 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.0 -0.8 +0.9 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.2 -0.1 +0.8 -0.5 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.2 +0.1 +1.0 -0.6 +0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.0 +1.2 -0.5 -0.0
carbon source D-Saccharic potassium salt (C) +0.0 +0.1 +1.3 -0.1 -0.5
No phage control -0.1 -0.3 +0.9 +0.1 +0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.0 +1.1 +0.3 -0.4
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.0 +1.5 -0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.1 +1.8 -0.3 +0.3
carbon source Xylobiose (C) +0.2 +0.1 +0.9 +0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +0.1 +0.5 +0.6 +0.1
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