Fitness for 5 genes in Agrobacterium fabrum C58

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Atu5030	Atu5031	Atu5032	Atu5033	Atu5034
nitrogen source	Putrescine (N)	-0.4	-0.4	-0.3	-0.0	-2.7
nitrogen source	6-aminocaproic (N)	-0.0	-0.2	-0.3	-0.1	-1.6
	Atjh2	-0.6	-0.3	-0.2	-0.2	-0.8
lb	LB	-0.4	-0.4	-0.3	-0.2	-0.8
nitrogen source	Orotic (N)	-0.3	+0.0	-0.1	-0.0	-1.5
in planta	Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.5	-0.1	+0.0	+0.3	-1.5
in planta	Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.4	-0.1	-0.2	-0.3	-0.8
nitrogen source	L-Methionine (N)	-0.1	+0.4	-0.1	-0.2	-1.7
pH	R2A pH 5.5	-0.4	-0.4	-0.5	-0.5	+0.1
pH	R2A pH 5.5	-0.7	-0.5	-0.7	-0.5	+0.8
nitrogen source	L-Phenylalanine (N)	-0.5	-0.4	+0.1	-0.2	-0.4
phage	Phage 95.3 + bacteria	+0.3	-0.0	-0.8	-0.2	-0.6
in planta	Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.2	+0.4	-0.2	-0.2	-1.1
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.8	-0.3	-0.3	-0.1	+0.4
phage	phage 95.1	+0.0	+0.3	-1.0	-0.6	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.2	-0.3	+0.2	+0.1	-1.2
	No phage control	+0.0	-1.1	-0.1	-0.3	+0.9
phage	Phage 95.3 + bacteria	-0.0	-0.1	-0.7	-0.3	+1.0
in planta	Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days	-0.5	+0.1	-0.2	-0.1	+0.8
in planta	Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days	-0.4	-0.1	-0.2	+0.1	+1.0
	Atjh14	+0.4	+0.3	+0.4	+0.2	-0.8
carbon source	2-Keto-D-gluconic hemicalcium salt (C)	-0.1	-0.2	+0.2	-0.1	+1.1
in planta	Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	-0.1	-0.1	-0.1	+0.0	+1.5
phage	AgroPhage_E10	-0.2	+0.5	+0.3	+0.1	+0.7
carbon source	L-Galactose (C)	+0.3	-0.1	+0.2	+0.1	+1.2
in planta	Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	+0.3	+0.2	+0.1	+0.2	+0.8
phage	AgroPhage_A07	-0.0	+1.2	+0.1	-0.0	+0.6
carbon source	D-Saccharic potassium salt (C)	+0.4	+0.1	+0.0	+0.1	+1.3
in planta	Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	+0.6	+0.2	+0.0	+0.0	+1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+0.1	-0.1	-0.1	+1.8