Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5016 and Atu5017 are separated by 92 nucleotidesAtu5017 and Atu5018 are separated by 34 nucleotidesAtu5018 and Atu5019 are separated by 25 nucleotidesAtu5019 and Atu5020 overlap by 4 nucleotides Atu5016: Atu5016 - hypothetical protein, at 16,428 to 17,576 Atu5016 Atu5017: Atu5017 - hypothetical protein, at 17,669 to 18,349 Atu5017 Atu5018: Atu5018 - hypothetical protein, at 18,384 to 19,208 Atu5018 Atu5019: Atu5019 - hypothetical protein, at 19,234 to 20,004 Atu5019 Atu5020: Atu5020 - hypothetical protein, at 20,001 to 21,335 Atu5020
Group Condition Atu5016 Atu5017 Atu5018 Atu5019 Atu5020
nitrogen source L-Ornithine (N) -0.2 -0.4 -0.2 -0.1 -0.4
nitrogen source L-Aspartic Acid (N) -0.1 -0.1 -0.4 -0.3 -0.2
stress R2A with hypochlorite 6.25 mM -0.3 -0.2 -0.2 -0.5 +0.1
nitrogen source L-Phenylalanine (N) -0.3 -0.4 +0.1 +0.0 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 +0.1 -0.3 -0.3
carbon source D-Sorbitol (C) -0.4 +0.1 +0.0 -0.2 -0.4
nitrogen source Hydantoin (N) +0.2 -0.2 -0.2 -0.6 +0.1
nitrogen source 5-Aminolevulinic (N) -0.1 -0.2 -0.6 +0.3 -0.1
carbon source D-Galacturonic Acid (C) -0.4 -0.2 -0.2 +0.2 +0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.1 -0.4 +0.3 +0.1
nitrogen source nitrate (N) +0.3 -0.3 -0.1 -0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 +0.4 -0.2 -0.2 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.2 +0.1 -0.2 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 +0.1 -0.6 -0.1
phage AgroPhage_E10 -0.2 +0.4 +0.2 -0.5 +0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.1 +0.0 +0.4 +0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.4 +0.1 +0.5 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.2 -0.1 -0.2 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.3 -0.5 +0.1 +0.3 -0.0
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.5 -0.2 +0.8 +0.1
nitrogen source DL-2-Aminobutyric (N) +0.7 -0.1 +0.1 -0.2 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.3 -0.2 +0.4 +0.2
phage AgroPhage_H04 +0.3 +0.3 +0.2 -0.2 +0.1
phage AgroPhage_D04 +0.1 -0.0 +0.2 +0.5 -0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.4 -0.2 +0.5 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.1 +0.1 +0.7 -0.0
nitrogen source Carnitine Hydrochloride (N) +0.3 -0.1 +0.1 +0.4 +0.2
carbon source D-Trehalose (C) +0.2 +0.2 +0.2 +0.3 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 +0.2 +0.5 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +0.3 +0.2 +0.3 -0.0
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