Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5011 and Atu5013 are separated by 692 nucleotidesAtu5013 and Atu5014 overlap by 4 nucleotidesAtu5014 and Atu5015 are separated by 14 nucleotidesAtu5015 and Atu5016 are separated by 298 nucleotides Atu5011: Atu5011 - polyketide biosynthesis dithiol-disulfide isomerase, at 13,082 to 13,723 Atu5011 Atu5013: Atu5013 - hypothetical protein, at 14,416 to 14,664 Atu5013 Atu5014: Atu5014 - plasmid stabilization protein, at 14,661 to 15,074 Atu5014 Atu5015: Atu5015 - phage-related integrase, at 15,089 to 16,129 Atu5015 Atu5016: Atu5016 - hypothetical protein, at 16,428 to 17,576 Atu5016
Group Condition Atu5011 Atu5013 Atu5014 Atu5015 Atu5016
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 N.D. -0.4 -0.5 -0.2
nitrogen source L-Histidine (N) -0.5 N.D. -0.4 -0.3 -0.2
carbon source Rhamnogalacturonan - from potato (C) -0.5 N.D. -0.6 -0.0 -0.3
stress R2A with m-arsenite 0.8 mM -0.4 N.D. -0.1 -0.5 -0.1
nitrogen source L-Arginine (N) -0.6 N.D. -0.2 -0.4 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 N.D. -0.4 -0.3 -0.1
carbon source methyl-beta-D-xylopyranoside (C) -0.2 N.D. -0.4 -0.4 -0.2
nitrogen source Orotic (N) -0.4 N.D. +0.1 -0.6 +0.0
carbon source D-Saccharic potassium salt (C) -0.6 N.D. +0.2 -0.1 -0.3
nitrogen source 5-Aminovaleric (N) -0.6 N.D. +0.3 +0.0 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 N.D. -0.3 -0.2 -0.5
nitrogen source Nicotinamide (N) -0.6 N.D. +0.4 -0.1 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 N.D. -0.5 +0.1 +0.5
phage AgroPhage_D04 +0.3 N.D. +0.3 -0.5 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.5 N.D. +0.2 -0.6 +0.3
phage AgroPhage_E10 +0.4 N.D. +0.4 -0.2 -0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 N.D. -0.2 -0.2 +0.3
phage AgroPhage_H04 +0.4 N.D. +0.4 -0.5 +0.3
phage AgroPhage_A07 +0.1 N.D. +0.4 -0.3 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 N.D. +0.2 +0.5 +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 N.D. -0.3 +0.5 +0.2
stress R2A with G418 disolution 0.02 mM +0.6 N.D. +0.4 +0.1 -0.1
nitrogen source DL-2-Aminobutyric (N) +0.0 N.D. +1.1 -0.7 +0.7
phage AgroPhage_F10 +0.5 N.D. +0.3 -0.0 +0.4
stress R2A with Kanamycin sulfate 0.02 mM +0.6 N.D. +0.0 +0.4 +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 N.D. +0.2 +0.3 +0.1
pH R2A pH 5.5 +0.2 N.D. +0.8 +0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 N.D. +0.9 +0.2 -0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 N.D. +0.9 -0.0 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.4 N.D. +0.4 -0.0 +0.3
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