Fitness for 5 genes in Agrobacterium fabrum C58

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1014 experiments or choose conditions or try the comparative fitness browser

500 ntAtu5000 and Atu5001 overlap by 4 nucleotidesAtu5001 and Atu5002 are separated by 200 nucleotidesAtu5002 and Atu5003 are separated by 332 nucleotidesAtu5003 and Atu5004 are separated by 44 nucleotides Atu5000: Atu5000 - replication protein A, at 70 to 1,377 Atu5000 Atu5001: Atu5001 - replication protein B, at 1,374 to 2,405 Atu5001 Atu5002: Atu5002 - replication initiation protein RepC, at 2,606 to 3,820 Atu5002 Atu5003: Atu5003 - fructosyl amino acid oxidase, at 4,153 to 5,280 Atu5003 Atu5004: Atu5004 - deoxyfructose oxidoreductase, at 5,325 to 6,332 Atu5004
Group Condition Atu5000 Atu5001 Atu5002 Atu5003 Atu5004
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.2 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.3 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.4 -0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.3 -0.3
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.3 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.2 -0.4
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.5 -0.0
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.2 -0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.1 -0.3
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.2 -0.2
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. N.D. -0.3 -0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. N.D. -0.4 +0.0
No phage control N.D. N.D. N.D. -0.4 +0.3
carbon source Betanin (C) N.D. N.D. N.D. +0.2 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. N.D. -0.3 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. N.D. -0.3 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. N.D. -0.2 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. N.D. N.D. -0.2 +0.3
stress R2A with Fusidic 0.002 mM N.D. N.D. N.D. -0.2 +0.3
nophagecontrol No phage control N.D. N.D. N.D. -0.1 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. N.D. -0.1 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. N.D. N.D. -0.1 +0.4
nitrogen source 6-aminocaproic (N) N.D. N.D. N.D. -0.2 +0.5
nitrogen source L-Valine (N) N.D. N.D. N.D. -0.1 +0.5
nitrogen source Urea (N) N.D. N.D. N.D. -0.1 +0.5
nitrogen source DL-2-Aminobutyric (N) N.D. N.D. N.D. -0.1 +0.6
nitrogen source spermidine (N) N.D. N.D. N.D. +0.2 +0.3
carbon source 2-Keto-D-gluconic hemicalcium salt (C) N.D. N.D. N.D. +0.3 +0.1
nitrogen source Hydantoin (N) N.D. N.D. N.D. +0.1 +0.6
remove
Atu5000
plot		 remove
Atu5001
plot		 remove
Atu5002		 remove
Atu5003
plot		 remove
Atu5004
plot