Fitness for 5 genes in Agrobacterium fabrum C58

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Atu8201	Atu8202	Atu4887	Atu4888	Atu4889
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	N.D.	-1.4	-1.4	-0.8	-1.7
in planta	Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	N.D.	-1.5	-1.3	-1.0	-1.4
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	N.D.	-1.5	-1.3	-0.6	-1.7
lb_sorghum ss 20	LB_Sorghum SS 20	N.D.	-1.4	-1.3	-1.1	-1.3
phage	Phage 97.2 + bacteria	N.D.	-1.1	-1.3	-1.4	-1.1
in planta	Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	N.D.	-1.3	-0.8	-1.4	-1.5
lb_sorghum rtx 430	LB_Sorghum Rtx 430	N.D.	-1.3	-1.3	-1.0	-1.4
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	N.D.	-1.1	-1.3	-1.0	-1.6
in planta	Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	N.D.	-1.4	-1.2	-1.3	-0.9
lb control	LB control	N.D.	-1.3	-0.9	-1.4	-1.3
lb_sorghum rtx 430	LB_Sorghum Rtx 430	N.D.	-1.3	-1.1	-1.1	-1.4
carbon source	D-Galacturonic Acid (C)	N.D.	+1.3	+1.1	+1.3	+1.1
carbon source	D-Cellobiose (C)	N.D.	+1.0	+1.2	+1.3	+1.4
phage	AgroPhage_F03	N.D.	+1.3	+1.4	+1.1	+1.0
carbon source	Ribitol (C)	N.D.	+1.2	+0.9	+1.5	+1.3
nophagecontrol	No phage control	N.D.	+1.0	+1.7	+1.0	+1.2
carbon source	Methyl alpha-D-glucopyranoside (C)	N.D.	+1.0	+1.2	+1.5	+1.2
phage	AgroPhage_D07	N.D.	+1.1	+1.4	+1.4	+1.2
carbon source	Lactulose (C)	N.D.	+1.3	+1.2	+1.4	+1.3
phage	AgroPhage_C04	N.D.	+1.6	+1.3	+1.1	+1.2
carbon source	Lactitol (C)	N.D.	+1.2	+1.4	+1.4	+1.6
nophagecontrol	No phage control	N.D.	+1.6	+1.5	+1.1	+1.4
nophagecontrol	No phage control	N.D.	+1.6	+1.5	+1.1	+1.4
carbon source	Ribitol (C)	N.D.	+1.4	+1.3	+1.5	+1.5
carbon source	m-Inositol (C)	N.D.	+1.4	+1.3	+1.5	+1.4
nophagecontrol	No phage control	N.D.	+1.5	+1.6	+1.5	+1.4
carbon source	Lactitol (C)	N.D.	+1.6	+1.4	+1.6	+1.7
carbon source	Xylitol (C)	N.D.	+1.3	+2.1	+1.6	+1.4
carbon source	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)	N.D.	+1.4	+1.4	+1.9	+1.7
carbon source	Betanin (C)	N.D.	+1.8	+1.4	+1.8	+1.6