Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4877 and Atu4878 are separated by 41 nucleotidesAtu4878 and Atu4879 are separated by 219 nucleotidesAtu4879 and Atu8043 are separated by 52 nucleotidesAtu8043 and Atu4880 are separated by 22 nucleotides Atu4877: Atu4877 - short-chain dehydrogenase, at 2,059,135 to 2,059,884 Atu4877 Atu4878: Atu4878 - hypothetical protein, at 2,059,926 to 2,060,339 Atu4878 Atu4879: Atu4879 - hypothetical protein, at 2,060,559 to 2,061,023 Atu4879 Atu8043: Atu8043 - hypothetical protein, at 2,061,076 to 2,061,357 Atu8043 Atu4880: Atu4880 - AraC family transcriptional regulator, at 2,061,380 to 2,062,297 Atu4880
Group Condition Atu4877 Atu4878 Atu4879 Atu8043 Atu4880
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -1.2 -1.2 N.D. -1.0
phage Phage 97.2 + bacteria -0.9 -1.1 -1.0 N.D. -0.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -1.2 -0.8 N.D. -0.9
phage Phage 100.2 + bactiera -0.8 -0.8 -1.1 N.D. -0.9
stress p-Coumaric 1.25 mM -0.7 -1.0 -0.9 N.D. -0.8
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) +0.7 +0.8 +0.9 N.D. +1.0
nophagecontrol No phage control +0.9 +0.8 +0.8 N.D. +0.9
carbon source NAG (C) +0.7 +0.9 +1.0 N.D. +0.8
nophagecontrol No phage control +1.0 +0.9 +0.6 N.D. +1.0
carbon source L-Sorbose (C) +0.9 +0.9 +0.7 N.D. +0.9
carbon source D-(-)-lyxose (C) +0.7 +0.9 +0.9 N.D. +0.9
nophagecontrol No phage control +1.1 +0.6 +0.7 N.D. +1.1
carbon source D-Galacturonic Acid (C) +0.8 +0.7 +1.2 N.D. +0.8
carbon source D-Trehalose (C) +0.7 +1.0 +0.9 N.D. +0.9
carbon source D-Maltose (C) +0.9 +0.7 +1.3 N.D. +0.8
carbon source Lactitol (C) +0.8 +0.9 +0.9 N.D. +1.1
carbon source Cellotetraose (C) +0.9 +0.8 +1.0 N.D. +1.0
phage AgroPhage_C04 +0.8 +1.0 +0.8 N.D. +1.1
carbon source Methyl alpha-D-glucopyranoside (C) +1.0 +0.8 +1.1 N.D. +0.8
carbon source m-Inositol (C) +0.9 +0.7 +1.1 N.D. +1.0
carbon source Ribitol (C) +0.9 +0.9 +1.1 N.D. +1.0
nophagecontrol No phage control +1.1 +0.8 +0.8 N.D. +1.3
carbon source Lactulose (C) +0.9 +1.0 +1.0 N.D. +1.1
carbon source Betanin (C) +0.9 +1.3 +1.0 N.D. +0.9
carbon source Ribitol (C) +1.0 +1.0 +1.1 N.D. +1.0
carbon source Xylitol (C) +1.0 +0.9 +1.3 N.D. +1.2
carbon source Sucrose (C) +1.0 +1.2 +1.1 N.D. +1.2
carbon source Lactitol (C) +1.2 +1.0 +1.3 N.D. +1.2
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) +1.2 +1.2 +1.4 N.D. +1.3
carbon source Betanin (C) +1.3 +1.3 +1.6 N.D. +1.4
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