Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4870 and Atu4872 are separated by 195 nucleotidesAtu4872 and Atu4873 are separated by 126 nucleotidesAtu4873 and Atu4874 are separated by 55 nucleotidesAtu4874 and Atu4875 are separated by 405 nucleotides Atu4870: Atu4870 - NADP-dependent quinone oxidoreductase, at 2,053,716 to 2,054,675 Atu4870 Atu4872: Atu4872 - LysR family transcriptional regulator, at 2,054,871 to 2,055,770 Atu4872 Atu4873: Atu4873 - TetR family transcriptional regulator, at 2,055,897 to 2,056,469 Atu4873 Atu4874: Atu4874 - hypothetical protein, at 2,056,525 to 2,056,959 Atu4874 Atu4875: Atu4875 - hypothetical protein, at 2,057,365 to 2,057,766 Atu4875
Group Condition Atu4870 Atu4872 Atu4873 Atu4874 Atu4875
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.3 -1.0 -1.1 -0.8
phage Phage 100.1 + bacteria -0.6 -0.5 -0.8 -0.9 -0.6
carbon source 2-6-dihydroxybenzoic (C) -0.6 -0.5 -0.8 -0.6 -1.0
phage Phage 97.2 + bacteria -0.6 -0.7 -0.7 -0.8 -0.5
carbon source sarcosine (C) -0.6 -0.6 -0.8 -0.5 -0.8
carbon source L-Sorbose (C) +0.6 +0.9 -0.1 +0.8 +1.0
carbon source D-Cellobiose (C) +0.8 +0.6 +0.4 +0.5 +1.0
phage AgroPhage_A07 +0.6 +0.5 +0.4 +0.7 +1.2
carbon source D-Trehalose (C) +0.8 +0.8 +0.2 +0.9 +0.8
carbon source Cellotetraose (C) +0.6 +0.7 +0.5 +0.6 +1.0
carbon source D-Maltose (C) +0.7 +0.7 +0.5 +0.7 +0.9
carbon source D-Galacturonic Acid (C) +0.9 +0.8 +0.2 +0.8 +0.9
carbon source D-Trehalose (C) +0.8 +0.6 +0.4 +0.7 +1.0
carbon source Methyl alpha-D-glucopyranoside (C) +0.8 +0.8 +0.3 +0.9 +1.0
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) +0.7 +0.9 +0.4 +1.0 +0.8
carbon source Lactitol (C) +0.8 +0.8 +0.3 +0.8 +1.1
carbon source m-Inositol (C) +0.7 +0.8 -0.0 +1.0 +1.3
nophagecontrol No phage control +0.5 +0.9 +0.7 +1.0 +1.1
carbon source Cellotetraose (C) +0.8 +0.8 +0.5 +0.8 +1.2
carbon source Xylitol (C) +0.9 +0.9 +0.2 +1.0 +1.1
carbon source Ribitol (C) +0.8 +1.0 +0.7 +0.6 +1.0
nophagecontrol No phage control +0.8 +0.7 +0.8 +1.0 +0.8
phage AgroPhage_C04 +0.5 +0.9 +1.3 +0.4 +1.1
carbon source Ribitol (C) +0.9 +0.9 +0.4 +0.9 +1.2
carbon source Betanin (C) +0.8 +0.9 +0.8 +0.8 +1.2
nophagecontrol No phage control +0.8 +0.9 +0.8 +1.1 +0.9
phage AgroPhage_C10 +0.4 +1.0 +0.9 +1.4 +1.0
carbon source Sucrose (C) +1.0 +1.1 +0.8 +0.9 +1.2
nophagecontrol No phage control +0.7 +1.3 +1.0 +1.0 +1.3
carbon source Betanin (C) +1.2 +1.2 +1.0 +1.1 +1.3
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