Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4846 and Atu4847 are separated by 24 nucleotidesAtu4847 and Atu4848 are separated by 19 nucleotidesAtu4848 and Atu4849 are separated by 41 nucleotidesAtu4849 and Atu4850 are separated by 468 nucleotides Atu4846: Atu4846 - hypothetical protein, at 2,026,305 to 2,027,387 Atu4846 Atu4847: Atu4847 - ribokinase, at 2,027,412 to 2,028,350 Atu4847 Atu4848: Atu4848 - 2-deoxyribose-5-phosphate aldolase, at 2,028,370 to 2,029,329 Atu4848 Atu4849: Atu4849 - NADP-dependent aldehyde dehydrogenase, at 2,029,371 to 2,031,737 Atu4849 Atu4850: Atu4850 - hypothetical protein, at 2,032,206 to 2,032,778 Atu4850
Group Condition Atu4846 Atu4847 Atu4848 Atu4849 Atu4850
stress R2A with silver chloride 5 mM -0.6 -0.6 -0.8 -0.6 -0.6
stress R2A with Nickel (II) chloride 0.05 mM -0.6 -0.5 -0.7 -0.5 -0.4
stress R2A with Carbenicillin 150 mM -0.6 -0.6 -0.4 -0.4 -0.6
No phage control -0.4 -0.6 -0.7 -0.4 -0.4
stress R2A with Cobalt chloride 0.02 mM -0.5 -0.4 -0.5 -0.4 -0.4
stress R2A with copper (II) chloride 0.04 mM -0.5 -0.4 -0.5 -0.4 -0.3
stress R2A with arsenate 50 mM -0.5 -0.5 -0.3 -0.5 -0.3
stress R2A with Ticarcillin 0.01 mM -0.4 -0.3 -0.3 -0.3 -0.6
stress R2A with tungstate 375 mM -0.6 -0.4 -0.4 -0.4 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.7 -0.3 +0.2 +1.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.4 +0.6 +0.6 +0.3
stress Pyrogallol 0.5 mM +0.5 +0.3 +0.4 +0.4 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.5 +0.4 +0.5 +0.3
carbon source Betanin (C) +0.5 +0.4 +0.3 +0.4 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.4 +0.5 +0.3 +0.4
lb_sorghum_leaf LB_sorghum_leaf +0.4 +0.4 +0.4 +0.3 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.2 +0.2 +0.4 +0.8
lb_sorghum_leaf LB_sorghum_leaf +0.4 +0.4 +0.3 +0.5 +0.5
lb_sorghum_leaf LB_sorghum_leaf +0.4 +0.4 +0.6 +0.4 +0.6
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.5 +0.8 +0.3 +0.3
nophagecontrol No phage control +0.5 +0.6 +0.5 +0.4 +0.3
lb_sorghum_leaf LB_sorghum_leaf +0.4 +0.4 +0.5 +0.4 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.6 +0.8 +0.2 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.5 +0.6 +0.5 +0.4 +0.4
lb_sorghum_leaf LB_sorghum_leaf +0.3 +0.5 +0.6 +0.4 +0.7
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.1 +0.6 +0.3 +0.3 +0.3
nophagecontrol No phage control +0.5 +0.4 +0.6 +0.6 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.7 +0.4 +0.5 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.4 +0.3 +0.5 +1.0
nophagecontrol No phage control +0.8 +0.5 +0.6 +0.7 +0.6
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