Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4822 and Atu4823 overlap by 4 nucleotidesAtu4823 and Atu4824 overlap by 4 nucleotidesAtu4824 and Atu4825 are separated by 1 nucleotidesAtu4825 and Atu4826 are separated by 64 nucleotides Atu4822: Atu4822 - acyl-CoA synthetase, at 2,001,585 to 2,003,225 Atu4822 Atu4823: Atu4823 - acetyl-CoA acetyltransferase, at 2,003,222 to 2,004,391 Atu4823 Atu4824: Atu4824 - IclR family transcriptional regulator, at 2,004,388 to 2,005,254 Atu4824 Atu4825: Atu4825 - dehydrogenase, at 2,005,256 to 2,006,071 Atu4825 Atu4826: Atu4826 - ABC transporter substrate binding protein, at 2,006,136 to 2,007,146 Atu4826
Group Condition Atu4822 Atu4823 Atu4824 Atu4825 Atu4826
carbon source D-Saccharic potassium salt (C) -0.7 -0.6 -2.5 -2.0 -0.2
carbon source D-Saccharic potassium salt (C) -0.8 -0.7 -2.6 -1.7 -0.0
carbon source Beta-alanine (C) -1.0 -0.8 -1.8 -1.4 +0.0
carbon source Beta-alanine (C) -0.8 -0.6 -1.5 -1.5 -0.0
carbon source D-Galacturonic Acid (C) -0.3 -0.3 -1.8 -1.6 -0.3
carbon source D-Galacturonic Acid (C) -0.2 -0.3 -1.8 -1.4 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.7 -1.2 -1.1 -0.1
carbon source L-Alanine (C) -0.5 -0.4 -1.2 -1.0 -0.1
carbon source L-Alanine (C) -0.6 -0.3 -1.1 -0.9 -0.1
stress R2A with Nickel (II) chloride 0.05 mM -0.5 -0.5 -0.8 -0.6 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.2 -1.4 -1.1 +0.3
carbon source Dihydroxyacetone (C) -0.2 -0.1 -1.2 -1.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.1 -0.9 -1.2 -0.3
carbon source 4-Aminobutyric (C) -0.3 -0.2 -0.8 -1.2 -0.0
carbon source Dihydroxyacetone (C) -0.4 -0.1 -1.1 -0.8 +0.1
carbon source 4-Aminobutyric (C) -0.4 -0.2 -0.8 -0.9 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.4 -0.4 -0.7 -0.3
stress R2A with silver chloride 5 mM -0.5 -0.4 -0.3 -0.5 -0.5
carbon source L-Sorbose (C) -0.2 -0.1 -0.9 -1.0 -0.0
stress R2A with tungstate 375 mM -0.8 -0.2 -0.4 -0.4 -0.4
carbon source Myristic (C) -0.2 -0.3 -0.9 -0.5 -0.2
carbon source sarcosine (C) -0.2 -0.1 -0.9 -0.9 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 +0.5 -0.7 -0.9 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.5 -0.8 -0.4 -0.2
phage AgroPhage_E10 -0.1 -0.1 +0.4 +1.0 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.4 +0.5 +0.3 +0.6
nophagecontrol No phage control +0.4 +0.5 +0.6 +0.3 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 +0.5 +0.7 +0.6 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.8 +0.8 +0.6 +0.4 +0.4
carbon source L-ascorbate (C) +0.1 +0.1 +3.5 +3.1 -0.1
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