Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4808 and Atu4809 are separated by 270 nucleotidesAtu4809 and Atu4810 are separated by 4 nucleotidesAtu4810 and Atu4811 are separated by 254 nucleotidesAtu4811 and Atu4812 are separated by 7 nucleotides Atu4808: Atu4808 - exopolysaccharide synthesis protein, at 1,986,131 to 1,987,363 Atu4808 Atu4809: Atu4809 - glycosyltransferase, at 1,987,634 to 1,988,833 Atu4809 Atu4810: Atu4810 - hypothetical protein, at 1,988,838 to 1,990,157 Atu4810 Atu4811: Atu4811 - UDP-phosphate alpha N-acetylglucosaminyltransferase, at 1,990,412 to 1,991,557 Atu4811 Atu4812: Atu4812 - hypothetical protein, at 1,991,565 to 1,992,263 Atu4812
Group Condition Atu4808 Atu4809 Atu4810 Atu4811 Atu4812
phage AgroPhage_E04 +0.4 -0.4 +0.5 -0.2 -0.4
stress Chloramphenicol 12.5 ug/mL +0.3 -0.5 +0.3 -0.5 +0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.5 -0.1 +0.4 +0.5
phage AgroPhage_F10 -0.3 +0.4 +0.3 +0.4 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.4 +0.5 +0.1 +0.4 +0.2
nophagecontrol No phage control +0.0 +0.3 +0.6 +0.4 +0.2
Atjh2 +0.5 +0.2 +0.5 +0.1 +0.2
lb_arabidopsis_leaf LB_arabidopsis_leaf +0.4 +0.4 +0.3 +0.3 +0.2
lb_sorghum_leaf LB_sorghum_leaf +0.3 +0.3 +0.3 +0.4 +0.2
lb_arabidopsis_leaf LB_arabidopsis_leaf +0.3 +0.4 +0.2 +0.5 +0.2
nophagecontrol No phage control +0.2 +0.3 +0.2 +0.5 +0.4
lb LB +0.3 +0.5 +0.2 +0.4 +0.1
lb_sorghum_leaf LB_sorghum_leaf +0.5 +0.4 +0.2 +0.3 +0.2
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.3 +0.4 +0.3 +0.5 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 +0.4 +0.4 +0.2
lb_arabidopsis_leaf LB_arabidopsis_leaf +0.4 +0.5 +0.2 +0.4 +0.3
stress Acetosyringone 1.25 mM +0.4 +0.3 +0.3 +0.5 +0.3
stress syringaldehyde 1.25 mM +0.3 +0.3 +0.4 +0.4 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.3 +0.4 +0.2 +0.6 +0.3
lb_arabidopsis_leaf LB_arabidopsis_leaf +0.4 +0.3 +0.3 +0.4 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.8 +0.3 +0.4 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.4 +0.4 +0.6 +0.1
stress Pyrogallol 0.5 mM +0.4 +0.4 +0.4 +0.4 +0.3
lb_sorghum_leaf LB_sorghum_leaf +0.5 +0.5 +0.3 +0.4 +0.2
nophagecontrol No phage control +0.3 +0.3 +0.5 +0.6 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.3 +0.3 +0.6 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.7 +0.3 +0.5 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.5 +0.3 +0.6 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.5 +0.4 +0.5 +1.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.7 +0.5 +0.8 +0.6
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