Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4794 and Atu4795 are separated by 54 nucleotidesAtu4795 and Atu4796 are separated by 86 nucleotidesAtu4796 and Atu4797 are separated by 5 nucleotidesAtu4797 and Atu4798 overlap by 4 nucleotides Atu4794: Atu4794 - polysaccharide biosynthesis protein, at 1,968,800 to 1,970,962 Atu4794 Atu4795: Atu4795 - LuxR family transcriptional regulator, at 1,971,017 to 1,971,727 Atu4795 Atu4796: Atu4796 - hypothetical protein, at 1,971,814 to 1,972,458 Atu4796 Atu4797: Atu4797 - glucose-1-phosphate cytidylyltransferase, at 1,972,464 to 1,973,276 Atu4797 Atu4798: Atu4798 - hypothetical protein, at 1,973,273 to 1,974,565 Atu4798
Group Condition Atu4794 Atu4795 Atu4796 Atu4797 Atu4798
Atjh14 -0.5 -0.1 -0.6 -0.5 +0.1
stress R2A with tungstate 375 mM -0.5 -0.0 -0.7 -0.3 +0.1
phage AgroPhage_H10 -0.2 -0.3 +0.2 +0.3 -0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.1 -0.0 +1.2 -0.1
lb_sorghum_leaf LB_sorghum_leaf +0.3 +0.3 +0.3 +0.4 +0.2
lb LB +0.3 +0.3 +0.2 +0.3 +0.3
stress syringaldehyde 0.5 mM +0.2 +0.4 +0.4 +0.2 +0.4
lb_arabidopsis_leaf LB_arabidopsis_leaf +0.4 +0.3 +0.4 +0.3 +0.1
carbon source 2-6-dihydroxybenzoic (C) +0.3 +0.3 +0.1 +0.7 +0.1
nophagecontrol No phage control +0.2 +0.3 +0.3 +0.6 +0.1
phage AgroPhage_C04 +0.1 -0.1 +0.4 +1.0 +0.2
lb LB +0.3 +0.2 +0.3 +0.4 +0.3
stress syringaldehyde 1.25 mM +0.3 +0.4 +0.3 +0.1 +0.5
lb_sorghum_leaf LB_sorghum_leaf +0.3 +0.4 +0.4 +0.3 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 +0.0 +0.7 +0.5
lb_arabidopsis_leaf LB_arabidopsis_leaf +0.3 +0.2 +0.4 +0.5 +0.3
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.3 +0.2 +0.4 +0.5 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.3 +0.4 +0.2 +0.4 +0.4
stress Pyrogallol 0.5 mM +0.2 +0.2 +0.4 +0.4 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.3 +0.4 +0.5 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.4 +0.6 +0.5 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.2 +0.6 +0.6 +0.3
lb_sorghum_leaf LB_sorghum_leaf +0.4 +0.4 +0.4 +0.5 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.3 +0.3 +0.5 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 +0.5 +0.4 +0.6 +0.4
Atjh2 +0.2 +0.4 +0.1 +0.9 +0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.4 +0.5 +0.5 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.5 +0.5 +0.6 +0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 +0.3 +0.8 +0.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.7 +0.5 +0.5 +0.7 +0.3
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